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    LOC101216221 mediator of RNA polymerase II transcription subunit 7a [ Cucumis sativus (cucumber) ]

    Gene ID: 101216221, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101216221
    Gene description
    mediator of RNA polymerase II transcription subunit 7a
    Locus tag
    Csa_017289
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101216221 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 7 NC_026661.2 (3261238..3264517)
    101 previous assembly ASM407v2 (GCF_000004075.2) 3 NC_026657.1 (30644639..30647936)

    Chromosome 7 - NC_026661.2Genomic Context describing neighboring genes Neighboring gene transcription factor bHLH162 Neighboring gene uncharacterized LOC116405107 Neighboring gene splicing factor 3B subunit 3 Neighboring gene strigolactone esterase D14-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of core mediator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of mediator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mediator of RNA polymerase II transcription subunit 7a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026661.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      3261238..3264517
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004136500.3 → XP_004136548.2  mediator of RNA polymerase II transcription subunit 7a

      Conserved Domains (1) summary
      pfam05983
      Location:3 → 157
      Med7; MED7 protein
    Nucleotide Protein
    Heading Accession and Version

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