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    LOC101214857 shikimate O-hydroxycinnamoyltransferase [ Cucumis sativus (cucumber) ]

    Gene ID: 101214857, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101214857
    Gene description
    shikimate O-hydroxycinnamoyltransferase
    Locus tag
    Csa_016460
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 7 NC_026661.2 (20194718..20198170, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 7 NC_026661.1 (16974073..16977803, complement)

    Chromosome 7 - NC_026661.2Genomic Context describing neighboring genes Neighboring gene 26S proteasome regulatory subunit 7 Neighboring gene pre-mRNA-splicing factor ISY1 homolog Neighboring gene probable protein phosphatase 2C 60 Neighboring gene uncharacterized LOC101214375

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular and biochemical basis for stress-induced accumulation of free and bound p-coumaraldehyde in cucumber. Varbanova M, et al. Plant Physiol, 2011 Nov. PMID 21940999, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    shikimate O-hydroxycinnamoyltransferase
    Names
    hydroxycinnamoyltransferase
    NP_001295843.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001308914.1 → NP_001295843.1  shikimate O-hydroxycinnamoyltransferase

      See identical proteins and their annotated locations for NP_001295843.1

      Status: PROVISIONAL

      Source sequence(s)
      JN005932
      UniProtKB/TrEMBL
      A0A0A0K9Z8, G8FL40
      Conserved Domains (2) summary
      pfam02458
      Location:1 → 427
      Transferase; Transferase family
      cl23789
      Location:1 → 430
      PLN02481; Omega-hydroxypalmitate O-feruloyl transferase

    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026661.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      20194718..20198170 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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