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    LOC101214593 acidic endochitinase [ Cucumis sativus (cucumber) ]

    Gene ID: 101214593, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101214593
    Gene description
    acidic endochitinase
    Locus tag
    Csa_000300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
    Also known as
    chitinase
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    Genomic context

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    See LOC101214593 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 5 NC_026659.2 (409728..410694, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 5 NC_026659.1 (3715026..3716151, complement)

    Chromosome 5 - NC_026659.2Genomic Context describing neighboring genes Neighboring gene DEAD-box ATP-dependent RNA helicase 10 Neighboring gene acidic endochitinase-like Neighboring gene acidic endochitinase-like Neighboring gene cytochrome P450 89A2 Neighboring gene protein timeless homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation of a complementary DNA encoding a chitinase with structural homology to a bifunctional lysozyme/chitinase. Metraux JP, et al. Proc Natl Acad Sci U S A, 1989 Feb. PMID 2915985, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acidic endochitinase
    Names
    class III chitinase
    NP_001295833.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001308904.2 → NP_001295833.1  acidic endochitinase precursor

      See identical proteins and their annotated locations for NP_001295833.1

      Status: VALIDATED

      Source sequence(s)
      GDIL01036495, GDIL01050667, GO898017, HM015248
      UniProtKB/Swiss-Prot
      P17541
      UniProtKB/TrEMBL
      D6QXZ9
      Conserved Domains (1) summary
      cd02877
      Location:26 → 289
      GH18_hevamine_XipI_class_III; This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that ...

    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026659.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      409728..410694 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P17541.1 GenPept UniProtKB/Swiss-Prot:P17541

    Gene LinkOut

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    Molecular Biology Databases