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    LOC101213776 protein yippee-like At5g53940 [ Cucumis sativus (cucumber) ]

    Gene ID: 101213776, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101213776
    Gene description
    protein yippee-like At5g53940
    Locus tag
    Csa_012456
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101213776 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 4 NC_026658.2 (23704782..23707455)
    101 previous assembly ASM407v2 (GCF_000004075.2) 4 NC_026658.1 (20576738..20579336)

    Chromosome 4 - NC_026658.2Genomic Context describing neighboring genes Neighboring gene 30S ribosomal protein S20, chloroplastic Neighboring gene ethylene-responsive transcription factor 4 Neighboring gene uncharacterized LOC101205593 Neighboring gene ribosomal protein L11 methyltransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein yippee-like At5g53940

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026658.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      23704782..23707455
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004146003.3 → XP_004146051.1  protein yippee-like At5g53940

      See identical proteins and their annotated locations for XP_004146051.1

      UniProtKB/TrEMBL
      A0A0A0L050
      Conserved Domains (1) summary
      cl13152
      Location:14 → 106
      RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
    Nucleotide Protein
    Heading Accession and Version

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