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    LOC101210632 thioredoxin-like protein Clot [ Cucumis sativus (cucumber) ]

    Gene ID: 101210632, updated on 11-Apr-2024

    Summary

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    Gene symbol
    LOC101210632
    Gene description
    thioredoxin-like protein Clot
    Locus tag
    Csa_001510
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101210632 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 3 NC_026657.2 (27935821..27939968, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 3 NC_026657.1 (26603046..26607084, complement)

    Chromosome 3 - NC_026657.2Genomic Context describing neighboring genes Neighboring gene FT-interacting protein 1 Neighboring gene 60S ribosomal protein L6-2 Neighboring gene uncharacterized LOC105435121 Neighboring gene O-fucosyltransferase 20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. Li Z, et al. BMC Genomics, 2011 Nov 2. PMID 22047402, Free PMC Article
    2. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. Guo S, et al. BMC Genomics, 2010 Jun 17. PMID 20565788, Free PMC Article
    3. The genome of the cucumber, Cucumis sativus L. Huang S, et al. Nat Genet, 2009 Dec. PMID 19881527
    4. An integrated genetic and cytogenetic map of the cucumber genome. Ren Y, et al. PLoS One, 2009 Jun 4. PMID 19495411, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein-disulfide reductase (NAD(P)H) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thioredoxin-like protein Clot; uncharacterized protein LOC101210632

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026657.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      27935821..27939968 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011653492.2 → XP_011651794.1  thioredoxin-like protein Clot isoform X2

      See identical proteins and their annotated locations for XP_011651794.1

      UniProtKB/TrEMBL
      A0A0A0LEX6
      Conserved Domains (1) summary
      cl00388
      Location:17 → 121
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold

    2. XM_011653491.2 → XP_011651793.1  uncharacterized protein LOC101210632 isoform X1

      Conserved Domains (2) summary
      pfam10225
      Location:216 → 519
      DUF2215; Uncharacterized conserved protein (DUF2215)
      cl00388
      Location:17 → 48
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
    Nucleotide Protein
    Heading Accession and Version

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