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    LOC101209423 protein DMR6-LIKE OXYGENASE 2 [ Cucumis sativus (cucumber) ]

    Gene ID: 101209423, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101209423
    Gene description
    protein DMR6-LIKE OXYGENASE 2
    Locus tag
    Csa_017140
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
    Also known as
    ga20ox2
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    Genomic context

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    See LOC101209423 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 7 NC_026661.2 (5541858..5551527, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 7 NC_026661.1 (5166360..5175486, complement)

    Chromosome 7 - NC_026661.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101221519 Neighboring gene methylesterase 3 Neighboring gene protein DMR6-LIKE OXYGENASE 2-like Neighboring gene probable esterase PIR7A Neighboring gene flavonol synthase/flavanone 3-hydroxylase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable 2-oxoglutarate-dependent dioxygenase At5g05600; protein DMR6-LIKE OXYGENASE 2
    Names
    gibberellin 20-oxidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026661.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      5541858..5551527 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031888628.1 → XP_031744488.1  probable 2-oxoglutarate-dependent dioxygenase At5g05600 isoform X1

      Conserved Domains (1) summary
      PLN02750
      Location:6 → 354
      PLN02750; oxidoreductase, 2OG-Fe(II) oxygenase family protein

    2. XM_011660618.2 → XP_011658920.1  protein DMR6-LIKE OXYGENASE 2 isoform X2

      Conserved Domains (3) summary
      PLN02750
      Location:1 → 348
      PLN02750; oxidoreductase, 2OG-Fe(II) oxygenase family protein
      pfam03171
      Location:196 → 293
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
      pfam14226
      Location:25 → 149
      DIOX_N; non-haem dioxygenase in morphine synthesis N-terminal

    3. XM_004136949.3 → XP_004136997.2  protein DMR6-LIKE OXYGENASE 2 isoform X3

      See identical proteins and their annotated locations for XP_004136997.2

      UniProtKB/TrEMBL
      A0A0A0K3A9
      Conserved Domains (1) summary
      PLN02750
      Location:1 → 348
      PLN02750; oxidoreductase, 2OG-Fe(II) oxygenase family protein
    Nucleotide Protein
    Heading Accession and Version

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