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    LOC101203377 uncharacterized calcium-binding protein At1g02270 [ Cucumis sativus (cucumber) ]

    Gene ID: 101203377, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101203377
    Gene description
    uncharacterized calcium-binding protein At1g02270
    Locus tag
    Csa_014990
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101203377 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 4 NC_026658.2 (6144913..6148366, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 4 NC_026658.1 (6021084..6024352, complement)

    Chromosome 4 - NC_026658.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101203864 Neighboring gene NAC domain-containing protein 62 Neighboring gene uncharacterized LOC101208449 Neighboring gene transfer RNA threonine (anticodon AGU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3'-5'-RNA exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized calcium-binding protein At1g02270

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026658.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      6144913..6148366 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011655032.2 → XP_011653334.1  uncharacterized calcium-binding protein At1g02270 isoform X1

      Conserved Domains (3) summary
      pfam13499
      Location:314 → 375
      EF-hand_7; EF-hand domain pair
      cl00490
      Location:35 → 242
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
      cl08302
      Location:309 → 375
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    2. XM_004137153.3 → XP_004137201.1  uncharacterized calcium-binding protein At1g02270 isoform X2

      See identical proteins and their annotated locations for XP_004137201.1

      UniProtKB/TrEMBL
      A0A0A0KVP1
      Conserved Domains (3) summary
      pfam13499
      Location:314 → 374
      EF-hand_7; EF-hand domain pair
      cl00490
      Location:35 → 242
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
      cl08302
      Location:309 → 375
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    Nucleotide Protein
    Heading Accession and Version

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