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    tmem30aa transmembrane protein 30Aa [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101158900, updated on 8-Mar-2024

    Summary

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    Gene symbol
    tmem30aa
    Gene description
    transmembrane protein 30Aa
    See related
    EnsemblRapid:ENSORLG00000017322
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Also known as
    tmem30a
    Orthologs
    zebrafish all
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    Genomic context

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    See tmem30aa in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 22 NC_019880.2 (15982835..15989404, complement)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 22 NC_019880.1 (15663764..15668819, complement)

    Chromosome 22 - NC_019880.2Genomic Context describing neighboring genes Neighboring gene CD109 antigen-like Neighboring gene collagen, type XII, alpha 1a Neighboring gene filamin-A-interacting protein 1 Neighboring gene transcription factor B1, mitochondrial Neighboring gene claudin 20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in phospholipid translocation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cell cycle control protein 50A
    Names
    transmembrane protein 30A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019880.2 Reference ASM223467v1 Primary Assembly

      Range
      15982835..15989404 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023951805.1 → XP_023807573.1  cell cycle control protein 50A

      UniProtKB/TrEMBL
      A0A3P9I5K7, H2MSC3
      Related
      ENSORLP00000021660.3, ENSORLT00000021661.3
      Conserved Domains (1) summary
      pfam03381
      Location:72 → 358
      CDC50; LEM3 (ligand-effect modulator 3) family / CDC50 family
    Nucleotide Protein
    Heading Accession and Version

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