U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    pou6f1 POU class 6 homeobox 1 [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101157777, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    pou6f1
    Gene description
    POU class 6 homeobox 1
    See related
    EnsemblRapid:ENSORLG00000015567
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See pou6f1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 7 NC_019865.2 (22365794..22379356)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 7 NC_019865.1 (22680119..22691403)

    Chromosome 7 - NC_019865.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101156894 Neighboring gene DAZ associated protein 2 Neighboring gene transcription factor CP2 Neighboring gene cysteine-serine-rich nuclear protein 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    POU domain, class 6, transcription factor 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019865.2 Reference ASM223467v1 Primary Assembly

      Range
      22365794..22379356
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011477539.3 → XP_011475841.1  POU domain, class 6, transcription factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A3P9H830
      Related
      ENSORLP00000037001.2, ENSORLT00000044334.2
      Conserved Domains (3) summary
      smart00352
      Location:467 → 541
      POU; Found in Pit-Oct-Unc transcription factors
      pfam00046
      Location:565 → 618
      Homeobox; Homeobox domain
      pfam03153
      Location:217 → 394
      TFIIA; Transcription factor IIA, alpha/beta subunit

    2. XM_011477540.3 → XP_011475842.1  POU domain, class 6, transcription factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A3B3HZI1, A0A3P9H757
      Related
      ENSORLP00000044803.2, ENSORLT00000040349.2
      Conserved Domains (3) summary
      smart00352
      Location:456 → 530
      POU; Found in Pit-Oct-Unc transcription factors
      pfam00046
      Location:554 → 607
      Homeobox; Homeobox domain
      pfam03153
      Location:206 → 383
      TFIIA; Transcription factor IIA, alpha/beta subunit
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.