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    PRDM5 PR/SET domain 5 [ Gorilla gorilla gorilla (western lowland gorilla) ]

    Gene ID: 101125188, updated on 1-Oct-2024

    Summary

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    Gene symbol
    PRDM5
    Gene description
    PR/SET domain 5
    See related
    Ensembl:ENSGGOG00000013562
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gorilla gorilla gorilla (sub-species: gorilla)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Gorilla
    Orthologs
    human mouse all
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    Genomic context

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    See PRDM5 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mGorGor1-v2.0_pri (GCF_029281585.2) 3 NC_073227.2 (140814679..141045173, complement)
    RS_2023_04 previous assembly NHGRI_mGorGor1-v1.1-0.2.freeze_pri (GCF_029281585.1) 4 NC_073228.1 (133599195..133827202, complement)

    Chromosome 3 - NC_073227.2Genomic Context describing neighboring genes Neighboring gene GTP-binding protein SAR1a-like Neighboring gene uncharacterized LOC115934347 Neighboring gene U6 spliceosomal RNA Neighboring gene neuron derived neurotrophic factor Neighboring gene TNFAIP3 interacting protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin insulator sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PR domain zinc finger protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_029281585.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

    Genomic

    1. NC_073227.2 Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

      Range
      140814679..141045173 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_055385798.2 → XP_055241773.1  PR domain zinc finger protein 5 isoform X4

    2. XM_019026066.4 → XP_018881611.1  PR domain zinc finger protein 5 isoform X2

      UniProtKB/TrEMBL
      A0A2I2YGF8
      Related
      ENSGGOP00000034020.1
      Conserved Domains (3) summary
      COG5048
      Location:174 → 589
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:460 → 480
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19190
      Location:2 → 128
      PR-SET_PRDM5; PR-SET domain found in PR domain zinc finger protein 5 (PRDM5) and similar proteins

    3. XM_055385797.2 → XP_055241772.1  PR domain zinc finger protein 5 isoform X3

    4. XM_019026065.4 → XP_018881610.1  PR domain zinc finger protein 5 isoform X1

      UniProtKB/TrEMBL
      A0A2I2ZNF0
      Related
      ENSGGOP00000048742.1
      Conserved Domains (4) summary
      COG5048
      Location:262 → 620
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:491 → 511
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19190
      Location:2 → 128
      PR-SET_PRDM5; PR-SET domain found in PR domain zinc finger protein 5 (PRDM5) and similar proteins
      cd20908
      Location:172 → 220
      SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

    5. XM_063705516.1 → XP_063561586.1  PR domain zinc finger protein 5 isoform X5

    6. XM_055385799.2 → XP_055241774.1  PR domain zinc finger protein 5 isoform X6

      UniProtKB/TrEMBL
      G3RCJ9
    Nucleotide Protein
    Heading Accession and Version

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