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    STAG2 STAG2 cohesin complex component [ Pan paniscus (pygmy chimpanzee) ]

    Gene ID: 100992232, updated on 3-Apr-2024

    Summary

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    Gene symbol
    STAG2
    Gene description
    STAG2 cohesin complex component
    See related
    Ensembl:ENSPPAG00000039185
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan paniscus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    See STAG2 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) X NC_073272.2 (123430792..123574279)
    RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) X NC_073272.1 (123434900..123577891)

    Chromosome X - NC_073272.2Genomic Context describing neighboring genes Neighboring gene coiled-coil-helix-coiled-coil-helix domain-containing protein 2-like Neighboring gene partitioning defective 6 homolog beta-like Neighboring gene U6 spliceosomal RNA Neighboring gene X-linked inhibitor of apoptosis Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC129395234

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sister chromatid cohesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of cohesin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cohesin subunit SA-2
    Names
    stromal antigen 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Genomic

    1. NC_073272.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

      Range
      123430792..123574279
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003823123.5 → XP_003823171.1  cohesin subunit SA-2 isoform X1

      See identical proteins and their annotated locations for XP_003823171.1

      UniProtKB/TrEMBL
      A0A2R9BTK7
      Related
      ENSPPAP00000033003.1
      Conserved Domains (1) summary
      pfam08514
      Location:157 → 265
      STAG; STAG domain

    2. XM_055106878.2 → XP_054962853.1  cohesin subunit SA-2 isoform X2

      UniProtKB/TrEMBL
      A0A2R9BU86

    3. XM_008976723.5 → XP_008974971.1  cohesin subunit SA-2 isoform X1

      See identical proteins and their annotated locations for XP_008974971.1

      UniProtKB/TrEMBL
      A0A2R9BTK7
      Conserved Domains (1) summary
      pfam08514
      Location:157 → 265
      STAG; STAG domain

    4. XM_055106877.2 → XP_054962852.1  cohesin subunit SA-2 isoform X2

      UniProtKB/TrEMBL
      A0A2R9BU86

    5. XM_055106876.3 → XP_054962851.1  cohesin subunit SA-2 isoform X1

      UniProtKB/TrEMBL
      A0A2R9BTK7

    6. XM_008976725.6 → XP_008974973.1  cohesin subunit SA-2 isoform X1

      See identical proteins and their annotated locations for XP_008974973.1

      UniProtKB/TrEMBL
      A0A2R9BTK7
      Conserved Domains (1) summary
      pfam08514
      Location:157 → 265
      STAG; STAG domain

    7. XM_057301197.2 → XP_057157180.1  cohesin subunit SA-2 isoform X2

      UniProtKB/TrEMBL
      A0A2R9BU86

    8. XM_063601960.1 → XP_063458030.1  cohesin subunit SA-2 isoform X1

      UniProtKB/TrEMBL
      A0A2R9BTK7

    9. XM_063601961.1 → XP_063458031.1  cohesin subunit SA-2 isoform X2

      UniProtKB/TrEMBL
      A0A2R9BU86

    10. XM_055106875.2 → XP_054962850.1  cohesin subunit SA-2 isoform X1

      UniProtKB/TrEMBL
      A0A2R9BTK7

    11. XM_008976728.5 → XP_008974976.1  cohesin subunit SA-2 isoform X1

      See identical proteins and their annotated locations for XP_008974976.1

      UniProtKB/TrEMBL
      A0A2R9BTK7
      Conserved Domains (1) summary
      pfam08514
      Location:157 → 265
      STAG; STAG domain

    12. XM_034950461.3 → XP_034806352.1  cohesin subunit SA-2 isoform X1

      UniProtKB/TrEMBL
      A0A2R9BTK7
      Conserved Domains (1) summary
      pfam08514
      Location:157 → 265
      STAG; STAG domain

    13. XM_008976724.5 → XP_008974972.1  cohesin subunit SA-2 isoform X1

      See identical proteins and their annotated locations for XP_008974972.1

      UniProtKB/TrEMBL
      A0A2R9BTK7
      Conserved Domains (1) summary
      pfam08514
      Location:157 → 265
      STAG; STAG domain

    14. XM_057301198.2 → XP_057157181.1  cohesin subunit SA-2 isoform X2

      UniProtKB/TrEMBL
      A0A2R9BU86

    15. XM_014343545.4 → XP_014199031.1  cohesin subunit SA-2 isoform X2

      UniProtKB/TrEMBL
      A0A2R9BU86
      Related
      ENSPPAP00000033016.1
      Conserved Domains (1) summary
      pfam08514
      Location:157 → 265
      STAG; STAG domain

    16. XM_057301196.2 → XP_057157179.1  cohesin subunit SA-2 isoform X2

      UniProtKB/TrEMBL
      A0A2R9BU86
    Nucleotide Protein
    Heading Accession and Version

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