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    LOC100887836 uncharacterized LOC100887836 [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 100887836, updated on 12-Aug-2022

    Summary

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    Gene symbol
    LOC100887836
    Gene description
    uncharacterized LOC100887836
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See LOC100887836 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145614.1 (1316419..1329643, complement)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577251.1 (406445..420553, complement)

    NW_022145614.1Genomic Context describing neighboring genes Neighboring gene V(D)J recombination-activating protein 1-like Neighboring gene mitochondrial ribosomal protein L3 Neighboring gene glutamic-oxaloacetic transaminase 2 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 6 Neighboring gene BOP1 ribosomal biogenesis factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC100887836

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145614.1 Reference Spur_5.0 Primary Assembly

      Range
      1316419..1329643 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030976253.1 → XP_030832113.1  uncharacterized protein LOC100887836 isoform X2

      UniProtKB/TrEMBL
      A0A7M7SUE0
      Conserved Domains (2) summary
      TIGR02168
      Location:67 → 330
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam01302
      Location:491 → 568
      CAP_GLY; CAP-Gly domain

    2. XM_030976252.1 → XP_030832112.1  uncharacterized protein LOC100887836 isoform X1

      UniProtKB/TrEMBL
      A0A7M7SUE0

    3. XM_030976254.1 → XP_030832114.1  uncharacterized protein LOC100887836 isoform X3

      UniProtKB/TrEMBL
      A0A7M7N6S6
      Conserved Domains (2) summary
      TIGR02168
      Location:4 → 260
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam01302
      Location:421 → 498
      CAP_GLY; CAP-Gly domain
    Nucleotide Protein
    Heading Accession and Version

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