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    tmod tropomodulin [ Megachile rotundata (alfalfa leafcutting bee) ]

    Gene ID: 100881916, updated on 10-Oct-2024

    Summary

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    Gene symbol
    tmod
    Gene description
    tropomodulin
    See related
    EnsemblRapid:LOC100881916
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Megachile rotundata
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Megachilidae; Megachilinae; Megachile
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    See tmod in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    101 current MROT_1.0 (GCF_000220905.1) Unplaced Scaffold NW_003797098.1 (461114..969486)

    NW_003797098.1Genomic Context describing neighboring genes Neighboring gene sex determination protein fruitless Neighboring gene methylthioribose-1-phosphate isomerase Neighboring gene DNA-directed RNA polymerase I subunit RPA43-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003797098.1 Unplaced Scaffold Reference MROT_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genes involved in convergent evolution of eusociality in bees. Woodard SH, et al. Proc Natl Acad Sci U S A, 2011 May 3. PMID 21482769, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tropomyosin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in myofibril assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pointed-end actin filament capping IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in myofibril IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tropomodulin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Megachile rotundata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MROT_1.0

    Genomic

    1. NW_003797098.1 Reference MROT_1.0

      Range
      461114..969486
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012279175.1 → XP_012134565.1  tropomodulin isoform X7

      See identical proteins and their annotated locations for XP_012134565.1

      Related
      XP_012134565.1, XM_012279175.1
      Conserved Domains (2) summary
      cd00116
      Location:273 → 401
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      pfam03250
      Location:70 → 213
      Tropomodulin; Tropomodulin

    2. XM_012279167.1 → XP_012134557.1  tropomodulin isoform X1

      Related
      XP_012134557.1, XM_012279167.1
      Conserved Domains (2) summary
      cd00116
      Location:273 → 413
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      pfam03250
      Location:70 → 213
      Tropomodulin; Tropomodulin

    3. XM_012279174.1 → XP_012134564.1  tropomodulin isoform X7

      See identical proteins and their annotated locations for XP_012134564.1

      Related
      XP_012134564.1, XM_012279174.1
      Conserved Domains (2) summary
      cd00116
      Location:273 → 401
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      pfam03250
      Location:70 → 213
      Tropomodulin; Tropomodulin

    4. XM_012279170.1 → XP_012134560.1  tropomodulin isoform X4

      Related
      XP_012134560.1, XM_012279170.1
      Conserved Domains (2) summary
      cd00116
      Location:273 → 401
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      pfam03250
      Location:70 → 213
      Tropomodulin; Tropomodulin

    5. XM_003700592.2 → XP_003700640.1  tropomodulin isoform X3

      Related
      XP_003700640.1, XM_003700592.2
      Conserved Domains (2) summary
      cd00116
      Location:273 → 401
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      pfam03250
      Location:70 → 213
      Tropomodulin; Tropomodulin

    6. XM_012279173.1 → XP_012134563.1  tropomodulin isoform X7

      See identical proteins and their annotated locations for XP_012134563.1

      Related
      XP_012134563.1, XM_012279173.1
      Conserved Domains (2) summary
      cd00116
      Location:273 → 401
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      pfam03250
      Location:70 → 213
      Tropomodulin; Tropomodulin

    7. XM_012279172.1 → XP_012134562.1  tropomodulin isoform X6

      Related
      XP_012134562.1, XM_012279172.1
      Conserved Domains (2) summary
      cd00116
      Location:273 → 401
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      pfam03250
      Location:70 → 213
      Tropomodulin; Tropomodulin

    8. XM_012279176.1 → XP_012134566.1  tropomodulin isoform X8

      Related
      XP_012134566.1, XM_012279176.1
      Conserved Domains (2) summary
      cd00116
      Location:273 → 401
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      pfam03250
      Location:70 → 213
      Tropomodulin; Tropomodulin

    9. XM_012279169.1 → XP_012134559.1  tropomodulin isoform X2

      See identical proteins and their annotated locations for XP_012134559.1

      Related
      XP_012134559.1, XM_012279169.1
      Conserved Domains (2) summary
      cd00116
      Location:259 → 399
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      pfam03250
      Location:56 → 199
      Tropomodulin; Tropomodulin

    10. XM_012279168.1 → XP_012134558.1  tropomodulin isoform X2

      See identical proteins and their annotated locations for XP_012134558.1

      Related
      XP_012134558.1, XM_012279168.1
      Conserved Domains (2) summary
      cd00116
      Location:259 → 399
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      pfam03250
      Location:56 → 199
      Tropomodulin; Tropomodulin

    11. XM_012279177.1 → XP_012134567.1  tropomodulin isoform X5

      See identical proteins and their annotated locations for XP_012134567.1

      Related
      XP_012134567.1, XM_012279177.1
      Conserved Domains (2) summary
      cd00116
      Location:211 → 351
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      pfam03250
      Location:8 → 151
      Tropomodulin; Tropomodulin

    12. XM_012279171.1 → XP_012134561.1  tropomodulin isoform X5

      See identical proteins and their annotated locations for XP_012134561.1

      Related
      XP_012134561.1, XM_012279171.1
      Conserved Domains (2) summary
      cd00116
      Location:211 → 351
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      pfam03250
      Location:8 → 151
      Tropomodulin; Tropomodulin

    13. XM_012279178.1 → XP_012134568.1  tropomodulin isoform X5

      See identical proteins and their annotated locations for XP_012134568.1

      Related
      XP_012134568.1, XM_012279178.1
      Conserved Domains (2) summary
      cd00116
      Location:211 → 351
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      pfam03250
      Location:8 → 151
      Tropomodulin; Tropomodulin

    RNA

    1. XR_001095009.1 RNA Sequence

      Related
      XR_001095009.1
    Nucleotide Protein
    Heading Accession and Version

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