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    KCNH1-IT1 KCNH1 intronic transcript 1 [ Homo sapiens (human) ]

    Gene ID: 100874296, updated on 17-Sep-2024

    Summary

    Official Symbol
    KCNH1-IT1provided by HGNC
    Official Full Name
    KCNH1 intronic transcript 1provided by HGNC
    Primary source
    HGNC:HGNC:41351
    See related
    AllianceGenome:HGNC:41351
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

    See KCNH1-IT1 in Genome Data Viewer
    Location:
    1q32.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (211132279..211133374, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (210377959..210379054, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (211305621..211306716, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372901 Neighboring gene MPRA-validated peak678 silencer Neighboring gene potassium voltage-gated channel subfamily H member 1 Neighboring gene MPRA-validated peak679 silencer Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_3130 Neighboring gene MPRA-validated peak680 silencer Neighboring gene importin 8 pseudogene 1 Neighboring gene Sharpr-MPRA regulatory region 3630 Neighboring gene MPRA-validated peak681 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr1:211306707-211306897 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1781 Neighboring gene ribosomal protein S25 pseudogene 2 Neighboring gene PRELID1 pseudogene 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Other Names

    • KCNH1 intronic transcript 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046784.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092017

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      211132279..211133374 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      210377959..210379054 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)