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    CSN3 casein kappa [ Capra hircus (goat) ]

    Gene ID: 100861231, updated on 8-Mar-2024

    Summary

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    Gene symbol
    CSN3
    Gene description
    casein kappa
    See related
    EnsemblRapid:ENSCHIG00000026883
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Capra hircus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
    Also known as
    CSN; CSNK; CSN10; Kappa-CN; k-casein
    Orthologs
    human mouse all
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    Genomic context

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    See CSN3 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current ASM170441v1 (GCF_001704415.1) 6 NC_030813.1 (86197263..86211376)
    101 previous assembly CHIR_1.0 (GCF_000317765.1) 6 NC_022298.1 (82894746..82908392)

    Chromosome 6 - NC_030813.1Genomic Context describing neighboring genes Neighboring gene odontogenic, ameloblast associated Neighboring gene uncharacterized LOC106502214 Neighboring gene calcium binding protein, spermatid associated 1 Neighboring gene uncharacterized LOC108636280

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic variation in CSN3 exon 4 region of Indian goats and a new nomenclature of CSN3 variants. Gautam D, et al. Anim Genet, 2019 Apr. PMID 30724371
    2. Comparative study of the amino acid sequences of the caseinomacropeptides from seven species. Mercier JC, et al. FEBS Lett, 1976 Dec 31. PMID 16386026
    3. Genetic polymorphism of goat kappa-casein (CSN3) in different breeds and characterization at DNA level. Caroli A, et al. Anim Genet, 2001 Aug. PMID 11531704
    4. Genetic polymorphism of the caprine kappa casein gene. Yahyaoui MH, et al. J Dairy Res, 2001 May. PMID 11504385
    5. Nucleotide sequence of the goat kappa-casein cDNA. Coll A, et al. J Anim Sci, 1993 Oct. PMID 8226388

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Comparison of sequences corresponding to 16 different single strand confirmation polymorphism patterns revealed 12 new polymorphism.
      Title: Genetic variation in CSN3 exon 4 region of Indian goats and a new nomenclature of CSN3 variants.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in lactation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein stabilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    kappa-casein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001285587.1 → NP_001272516.1  kappa-casein precursor

      See identical proteins and their annotated locations for NP_001272516.1

      Status: PROVISIONAL

      Source sequence(s)
      X60763
      UniProtKB/Swiss-Prot
      P02670, Q8SPM9, Q8SPN0, Q8SPV1, Q8SPW6, Q8SPW7, Q8SPW8, Q8WMV5, Q8WN74
      UniProtKB/TrEMBL
      A0A5K6WAG1, A0A858NBR7
      Related
      ENSCHIP00000033244.2, ENSCHIT00000041122.2
      Conserved Domains (1) summary
      pfam00997
      Location:22 → 191
      Casein_kappa; Kappa casein

    RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM170441v1 Primary Assembly

    Genomic

    1. NC_030813.1 Reference ASM170441v1 Primary Assembly

      Range
      86197263..86211376
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P02670.2 GenPept UniProtKB/Swiss-Prot:P02670

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.