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    LOC100859952 2-carboxy-D-arabinitol-1-phosphatase-like [ Triticum aestivum (bread wheat) ]

    Gene ID: 100859952, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC100859952
    Gene description
    2-carboxy-D-arabinitol-1-phosphatase-like
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Triticum aestivum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
    Also known as
    c1pp
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    Genomic context

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    See LOC100859952 in Genome Data Viewer
    Location:
    chromosome: 4D
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current IWGSC CS RefSeq v2.1 (GCF_018294505.1) 4D NC_057805.1 (115309440..115312873)

    Chromosome 4D - NC_057805.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123096625 Neighboring gene probable ATP-dependent RNA helicase ddx5 Neighboring gene seipin-1-like Neighboring gene uncharacterized LOC123096637

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_057805.1 Chromosome 4D Reference IWGSC CS RefSeq v2.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of ca1pase Decreases Rubisco Abundance and Grain Yield in Wheat. Lobo AKM, et al. Plant Physiol, 2019 Oct. PMID 31366720, Free PMC Article
    2. Comparative Temporal Transcriptome Profiling of Wheat near Isogenic Line Carrying Lr57 under Compatible and Incompatible Interactions. Yadav IS, et al. Front Plant Sci, 2016. PMID 28066494, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Overexpression of ca1pase Decreases Rubisco Abundance and Grain Yield in Wheat.
      Title: Overexpression of ca1pase Decreases Rubisco Abundance and Grain Yield in Wheat.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    2-carboxy-D-arabinitol-1-phosphatase
    Names
    2-carboxy-D-arabinitol 1-phosphate (CA1P) phosphatase
    XP_044374330.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001425291.1 → NP_001412220.1  2-carboxy-D-arabinitol-1-phosphatase

      Status: VALIDATED

      Source sequence(s)
      DR738433, GEWU01207436, HE603918
      UniProtKB/Swiss-Prot
      G4VUY9, W5EP13
      UniProtKB/TrEMBL
      A0A3B6HVI3, A0A9R1GVQ3

    RefSeqs of Annotated Genomes: Triticum aestivum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IWGSC CS RefSeq v2.1 Primary Assembly

    Genomic

    1. NC_057805.1 Reference IWGSC CS RefSeq v2.1 Primary Assembly

      Range
      115309440..115312873
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044518395.1 → XP_044374330.1  2-carboxy-D-arabinitol-1-phosphatase

      Conserved Domains (2) summary
      COG0406
      Location:268 → 478
      PhoE; Broad specificity phosphatase PhoE [Carbohydrate transport and metabolism]
      pfam00300
      Location:53 → 247
      His_Phos_1; Histidine phosphatase superfamily (branch 1)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    W5EP13.1 GenPept UniProtKB/Swiss-Prot:W5EP13

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases