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    LOC100835800 heat stress transcription factor A-2b [ Brachypodium distachyon (stiff brome) ]

    Gene ID: 100835800, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC100835800
    Gene description
    heat stress transcription factor A-2b
    Locus tag
    BRADI_1g55630v3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brachypodium distachyon
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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    Genomic context

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    See LOC100835800 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (54335705..54339344, complement)
    102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (54408414..54412047, complement)

    Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene low molecular mass early light-inducible protein HV90, chloroplastic Neighboring gene high molecular mass early light-inducible protein HV58, chloroplastic Neighboring gene ETO1-like protein 1 Neighboring gene protein LIFEGUARD 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heat stress transcription factor A-2b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Genomic

    1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

      Range
      54335705..54339344 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010229991.3 → XP_010228293.1  heat stress transcription factor A-2b

      See identical proteins and their annotated locations for XP_010228293.1

      UniProtKB/TrEMBL
      I1H355
      Conserved Domains (1) summary
      smart00415
      Location:51 → 144
      HSF; heat shock factor

    2. XM_010229990.3 → XP_010228292.1  heat stress transcription factor A-2b

      See identical proteins and their annotated locations for XP_010228292.1

      UniProtKB/TrEMBL
      I1H355
      Conserved Domains (1) summary
      smart00415
      Location:51 → 144
      HSF; heat shock factor

    3. XM_024457428.1 → XP_024313196.1  heat stress transcription factor A-2b

      UniProtKB/TrEMBL
      I1H355
      Conserved Domains (1) summary
      smart00415
      Location:51 → 144
      HSF; heat shock factor
    Nucleotide Protein Strain
    Heading Accession and Version

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