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    LOC100831170 L-type lectin-domain containing receptor kinase IX.2 [ Brachypodium distachyon (stiff brome) ]

    Gene ID: 100831170, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC100831170
    Gene description
    L-type lectin-domain containing receptor kinase IX.2
    Locus tag
    BRADI_4g40470v3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brachypodium distachyon
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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    Genomic context

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    See LOC100831170 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 4 NC_016134.3 (44809923..44813118)
    102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 4 NC_016134.2 (44992412..44995302)

    Chromosome 4 - NC_016134.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104584757 Neighboring gene uncharacterized LOC100830863 Neighboring gene uncharacterized LOC106866584 Neighboring gene protein CHROMATIN REMODELING 24 Neighboring gene putative disease resistance RPP13-like protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    L-type lectin-domain containing receptor kinase IX.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Genomic

    1. NC_016134.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

      Range
      44809923..44813118
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003576923.4 → XP_003576971.1  L-type lectin-domain containing receptor kinase IX.2

      UniProtKB/TrEMBL
      A0A0Q3PQX6, A0A2K2CTH3
      Conserved Domains (2) summary
      cd06899
      Location:47 → 288
      lectin_legume_LecRK_Arcelin_ConA; legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor
      cl21453
      Location:360 → 638
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein Strain
    Heading Accession and Version

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