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    LOC100830837 E3 ubiquitin-protein ligase EL5 [ Brachypodium distachyon (stiff brome) ]

    Gene ID: 100830837, updated on 6-Apr-2023

    Summary

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    Gene symbol
    LOC100830837
    Gene description
    E3 ubiquitin-protein ligase EL5
    Locus tag
    BRADI_3g46040v3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brachypodium distachyon
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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    Genomic context

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    See LOC100830837 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (47726834..47728727, complement)
    102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (48024082..48025614, complement)

    Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase EL5 Neighboring gene uncharacterized LOC104583783 Neighboring gene DNA repair protein XRCC3 homolog Neighboring gene calmodulin-binding protein 60 B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources. Mochida K, et al. PLoS One, 2013. PMID 24130698, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase EL5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Genomic

    1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

      Range
      47726834..47728727 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003572577.4 → XP_003572625.1  E3 ubiquitin-protein ligase EL5

      UniProtKB/TrEMBL
      I1IAL7
      Conserved Domains (1) summary
      pfam13639
      Location:121 → 164
      zf-RING_2; Ring finger domain
    Nucleotide Protein Strain
    Heading Accession and Version

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