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    LOC100816306 pyridoxal 5'-phosphate synthase subunit PDX1 [ Glycine max (soybean) ]

    Gene ID: 100816306, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100816306
    Gene description
    pyridoxal 5'-phosphate synthase subunit PDX1
    Locus tag
    GLYMA_13G225000v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100816306 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 13 NC_038249.2 (33197455..33198905, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 13 NC_038249.1 (33792435..33794056, complement)

    Chromosome 13 - NC_038249.2Genomic Context describing neighboring genes Neighboring gene dynamin-related protein 4C-like Neighboring gene aquaporin NIP1-8 Neighboring gene probable C-terminal domain small phosphatase Neighboring gene uncharacterized LOC100781567

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables amine-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amino acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pyridoxal phosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pyridoxine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pyridoxal 5'-phosphate synthase subunit PDX1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038249.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      33197455..33198905 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003542937.4 → XP_003542985.1  pyridoxal 5'-phosphate synthase subunit PDX1

      UniProtKB/TrEMBL
      I1M1P1, Q45FF0
      Conserved Domains (1) summary
      PRK04180
      Location:27 → 309
      PRK04180; pyridoxal 5'-phosphate synthase lyase subunit PdxS
    Nucleotide Protein
    Heading Accession and Version

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