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    NIP6-3 aquaporin NIP6-3 [ Glycine max (soybean) ]

    Gene ID: 100815637, updated on 7-Dec-2023

    Summary

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    Gene symbol
    NIP6-3
    Gene description
    aquaporin NIP6-3
    Locus tag
    GLYMA_15G003900v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    GmNIP6;3
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    Genomic context

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    See NIP6-3 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 15 NC_038251.2 (356051..360339)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 15 NC_038251.1 (356138..360368)

    Chromosome 15 - NC_038251.2Genomic Context describing neighboring genes Neighboring gene bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like Neighboring gene uncharacterized LOC100500093 Neighboring gene uncharacterized LOC100809039 Neighboring gene zinc finger protein 1 Neighboring gene ethylene-responsive transcription factor ERF003

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Investigation of the AQP Family in Soybean and the Promoter Activity of TIP2;6 in Heat Stress and Hormone Responses. Feng ZJ, et al. Int J Mol Sci, 2019 Jan 10. PMID 30634702, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aquaporin NIP6-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038251.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      356051..360339
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003547244.4 → XP_003547292.1  aquaporin NIP6-1

      See identical proteins and their annotated locations for XP_003547292.1

      UniProtKB/TrEMBL
      I1MCB4
      Conserved Domains (1) summary
      cl00200
      Location:8 → 304
      MIP; Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal ...
    Nucleotide Protein
    Heading Accession and Version

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