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    LOC100813640 disease resistance protein RUN1 [ Glycine max (soybean) ]

    Gene ID: 100813640, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100813640
    Gene description
    disease resistance protein RUN1
    Locus tag
    GLYMA_13G028100v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100813640 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 13 NC_038249.2 (6392060..6402423)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 13 NC_038249.1 (7328902..7339106)

    Chromosome 13 - NC_038249.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71 Neighboring gene photosystem II protein D1-like Neighboring gene probable glutathione S-transferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RUN1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038249.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      6392060..6402423
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041007870.1 → XP_040863804.1  disease resistance protein RUN1

      UniProtKB/TrEMBL
      K7LYT2
      Conserved Domains (2) summary
      PLN03210
      Location:24 → 805
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:558 → 602
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_014766406.3 → XP_014621892.1  disease resistance protein RUN1

      UniProtKB/TrEMBL
      K7LYT2
      Conserved Domains (2) summary
      PLN03210
      Location:24 → 805
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:558 → 602
      LRR_RI; leucine-rich repeat [structural motif]

    3. XM_014766405.3 → XP_014621891.1  disease resistance protein RUN1

      UniProtKB/TrEMBL
      K7LYT2
      Conserved Domains (2) summary
      PLN03210
      Location:24 → 805
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:558 → 602
      LRR_RI; leucine-rich repeat [structural motif]

    4. XM_014766404.3 → XP_014621890.1  disease resistance protein RUN1

      UniProtKB/TrEMBL
      K7LYT2
      Conserved Domains (2) summary
      PLN03210
      Location:24 → 805
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:558 → 602
      LRR_RI; leucine-rich repeat [structural motif]

    5. XM_041007869.1 → XP_040863803.1  disease resistance protein RUN1

      UniProtKB/TrEMBL
      K7LYT2
      Conserved Domains (2) summary
      PLN03210
      Location:24 → 805
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:558 → 602
      LRR_RI; leucine-rich repeat [structural motif]

    6. XM_006593836.4 → XP_006593899.1  disease resistance protein RUN1

      See identical proteins and their annotated locations for XP_006593899.1

      UniProtKB/TrEMBL
      K7LYT2
      Conserved Domains (2) summary
      PLN03210
      Location:24 → 805
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:558 → 602
      LRR_RI; leucine-rich repeat [structural motif]

    7. XM_014766402.3 → XP_014621888.1  disease resistance protein RUN1

      UniProtKB/TrEMBL
      K7LYT2
      Conserved Domains (2) summary
      PLN03210
      Location:24 → 805
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:558 → 602
      LRR_RI; leucine-rich repeat [structural motif]

    8. XM_014766403.3 → XP_014621889.1  disease resistance protein RUN1

      UniProtKB/TrEMBL
      K7LYT2
      Conserved Domains (2) summary
      PLN03210
      Location:24 → 805
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:558 → 602
      LRR_RI; leucine-rich repeat [structural motif]

    9. XM_014766400.3 → XP_014621886.1  disease resistance protein RUN1

      UniProtKB/TrEMBL
      K7LYT2
      Conserved Domains (2) summary
      PLN03210
      Location:24 → 805
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:558 → 602
      LRR_RI; leucine-rich repeat [structural motif]

    10. XM_014766401.3 → XP_014621887.1  disease resistance protein RUN1

      UniProtKB/TrEMBL
      K7LYT2
      Conserved Domains (2) summary
      PLN03210
      Location:24 → 805
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:558 → 602
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
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