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    LOC100811020 ethylene-responsive transcription factor ERF027 [ Glycine max (soybean) ]

    Gene ID: 100811020, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100811020
    Gene description
    ethylene-responsive transcription factor ERF027
    Locus tag
    GLYMA_01G216200v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100811020 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 1 NC_016088.4 (55779762..55780492, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 1 NC_016088.3 (54680827..54681683, complement)

    Chromosome 1 - NC_016088.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102659854 Neighboring gene dehydration-responsive element-binding protein 1E Neighboring gene uncharacterized LOC100305897 Neighboring gene anaphase-promoting complex subunit 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ethylene-responsive transcription factor ERF027

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_016088.4 Reference Glycine_max_v4.0 Primary Assembly

      Range
      55779762..55780492 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006573696.4 → XP_006573759.1  ethylene-responsive transcription factor ERF027

      UniProtKB/TrEMBL
      I1JA36
      Conserved Domains (1) summary
      cl00033
      Location:15 → 72
      AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
    Nucleotide Protein
    Heading Accession and Version

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