U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC100804865 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 [ Glycine max (soybean) ]

    Gene ID: 100804865, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC100804865
    Gene description
    probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5
    Locus tag
    GLYMA_11G120600v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC100804865 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 11 NC_038247.2 (9176511..9180635, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 11 NC_038247.1 (9200472..9204531, complement)

    Chromosome 11 - NC_038247.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100527769 Neighboring gene UPF0496 protein At4g34320 Neighboring gene phospholipase A-2-activating protein Neighboring gene cytochrome c biogenesis protein CCS1, chloroplastic

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038247.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      9176511..9180635 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006590838.4 → XP_006590901.1  probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1

      See identical proteins and their annotated locations for XP_006590901.1

      UniProtKB/TrEMBL
      I1LJG8
      Conserved Domains (1) summary
      PLN02510
      Location:12 → 371
      PLN02510; probable 1-acyl-sn-glycerol-3-phosphate acyltransferase

    2. XM_006590839.4 → XP_006590902.1  probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1

      See identical proteins and their annotated locations for XP_006590902.1

      UniProtKB/TrEMBL
      I1LJG8
      Conserved Domains (1) summary
      PLN02510
      Location:12 → 371
      PLN02510; probable 1-acyl-sn-glycerol-3-phosphate acyltransferase

    3. XM_041006703.1 → XP_040862637.1  probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1

      UniProtKB/TrEMBL
      I1LJG8
      Conserved Domains (1) summary
      PLN02510
      Location:12 → 371
      PLN02510; probable 1-acyl-sn-glycerol-3-phosphate acyltransferase

    4. XM_003537848.5 → XP_003537896.2  probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X2

      UniProtKB/TrEMBL
      K7LPA9
      Conserved Domains (1) summary
      PLN02510
      Location:1 → 332
      PLN02510; probable 1-acyl-sn-glycerol-3-phosphate acyltransferase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.