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    LOC100801955 cellulose synthase A catalytic subunit 4 [UDP-forming] [ Glycine max (soybean) ]

    Gene ID: 100801955, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100801955
    Gene description
    cellulose synthase A catalytic subunit 4 [UDP-forming]
    Locus tag
    GLYMA_15G157100v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC100801955 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 15 NC_038251.2 (13176519..13183168)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 15 NC_038251.1 (13179259..13185906)

    Chromosome 15 - NC_038251.2Genomic Context describing neighboring genes Neighboring gene polygalacturonase QRT3-like Neighboring gene uncharacterized LOC102659695 Neighboring gene polygalacturonase QRT3 Neighboring gene RING-H2 finger protein ATL74

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cellulose synthase (UDP-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant-type primary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cellulose synthase A catalytic subunit 4 [UDP-forming]

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038251.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      13176519..13183168
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014768264.3 → XP_014623750.1  cellulose synthase A catalytic subunit 4 [UDP-forming]

      UniProtKB/TrEMBL
      A0A0R0G1U8
      Conserved Domains (3) summary
      PLN02915
      Location:25 → 1050
      PLN02915; cellulose synthase A [UDP-forming], catalytic subunit
      pfam14569
      Location:38 → 96
      zf-UDP; Zinc-binding RING-finger
      cl11394
      Location:475 → 801
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    Nucleotide Protein
    Heading Accession and Version

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