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    LOC100793754 transcription factor SPATULA [ Glycine max (soybean) ]

    Gene ID: 100793754, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100793754
    Gene description
    transcription factor SPATULA
    Locus tag
    GLYMA_11G054600v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100793754 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 11 NC_038247.2 (4107683..4111585)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 11 NC_038247.1 (4115043..4118972)

    Chromosome 11 - NC_038247.2Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase 20-like Neighboring gene caffeoyl-CoA O-methyltransferase 5 Neighboring gene nicotinate phosphoribosyltransferase 2-like Neighboring gene probable serine/threonine-protein kinase At1g01540

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor SPATULA
    Names
    bHLH transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038247.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      4107683..4111585
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006590591.4 → XP_006590654.1  transcription factor SPATULA isoform X2

      Conserved Domains (1) summary
      cd00083
      Location:143 → 172
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

    2. XM_003539307.5 → XP_003539355.1  transcription factor SPATULA isoform X1

      See identical proteins and their annotated locations for XP_003539355.1

      UniProtKB/TrEMBL
      I1LHD3
      Conserved Domains (1) summary
      cd11445
      Location:143 → 202
      bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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