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    NF-YA12 nuclear transcription factor Y subunit A-12 [ Glycine max (soybean) ]

    Gene ID: 100792905, updated on 7-Dec-2023

    Summary

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    Gene symbol
    NF-YA12
    Gene description
    nuclear transcription factor Y subunit A-12
    Locus tag
    GLYMA_13G107900v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    GmNFYA3; GmNF-YA3; GmNF-YA12
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    Genomic context

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    See NF-YA12 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 13 NC_038249.2 (21251791..21256470, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 13 NC_038249.1 (22225386..22230150, complement)

    Chromosome 13 - NC_038249.2Genomic Context describing neighboring genes Neighboring gene PHD finger protein Alfin-like Neighboring gene alpha/beta hydrolase domain-containing protein WAV2 Neighboring gene stemmadenine O-acetyltransferase Neighboring gene phospholipid:diacylglycerol acyltransferase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. GmNFYA3, a target gene of miR169, is a positive regulator of plant tolerance to drought stress. Ni Z, et al. Plant Mol Biol, 2013 May. PMID 23483290
    2. Genome-wide expression analysis of soybean NF-Y genes reveals potential function in development and drought response. Quach TN, et al. Mol Genet Genomics, 2015 Jun. PMID 25542200, Free PMC Article
    3. Large-scale sequencing of normalized full-length cDNA library of soybean seed at different developmental stages and analysis of the gene expression profiles based on ESTs. Sha AH, et al. Mol Biol Rep, 2012 Mar. PMID 21667246

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The GmNFYA3 gene functions in positive modulation of drought stress tolerance and miR169 directs GmNFYA3 mRNA cleavage.[GmNFYA3]
      Title: GmNFYA3, a target gene of miR169, is a positive regulator of plant tolerance to drought stress.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear transcription factor Y subunit A-12
    Names
    nuclear transcription factor Y subunit A-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001362826.1 → NP_001349755.1  nuclear transcription factor Y subunit A-12 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      ACUP04004674, BU546984, HO025915
      UniProtKB/TrEMBL
      I1LY31
      Conserved Domains (1) summary
      smart00521
      Location:71 → 132
      CBF; CCAAT-Binding transcription Factor

    2. NM_001362827.1 → NP_001349756.1  nuclear transcription factor Y subunit A-12 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) includes an alternate exon in the 5' coding region compared to variant 1, resulting in a novel 5' coding region and longer 5' UTR. It encodes isoform 2 which has a distinct N-terminus, compared to isoform 1.
      Source sequence(s)
      ACUP04004674, AK245196
      Conserved Domains (1) summary
      smart00521
      Location:48 → 109
      CBF; CCAAT-Binding transcription Factor

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038249.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      21251791..21256470 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014765428.3 → XP_014620914.1  nuclear transcription factor Y subunit A-12 isoform X2

      Conserved Domains (1) summary
      smart00521
      Location:54 → 115
      CBF; CCAAT-Binding transcription Factor

    2. XM_003542304.5 → XP_003542352.1  nuclear transcription factor Y subunit A-12 isoform X1

      See identical proteins and their annotated locations for XP_003542352.1

      UniProtKB/TrEMBL
      I1LY31
      Conserved Domains (1) summary
      smart00521
      Location:71 → 132
      CBF; CCAAT-Binding transcription Factor

    3. XM_041007801.1 → XP_040863735.1  nuclear transcription factor Y subunit A-12 isoform X1

      UniProtKB/TrEMBL
      I1LY31
      Conserved Domains (1) summary
      smart00521
      Location:71 → 132
      CBF; CCAAT-Binding transcription Factor

    4. XM_041007802.1 → XP_040863736.1  nuclear transcription factor Y subunit A-12 isoform X3

      Conserved Domains (1) summary
      smart00521
      Location:48 → 109
      CBF; CCAAT-Binding transcription Factor
    Nucleotide Protein
    Heading Accession and Version

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