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    LOC100790413 phosphatidylglycerophosphate phosphatase PTPMT2 [ Glycine max (soybean) ]

    Gene ID: 100790413, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100790413
    Gene description
    phosphatidylglycerophosphate phosphatase PTPMT2
    Locus tag
    GLYMA_05G062900v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100790413 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 5 NC_038241.2 (6101034..6106107)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 5 NC_038241.1 (5978432..5983470)

    Chromosome 5 - NC_038241.2Genomic Context describing neighboring genes Neighboring gene uncharacterized protein DDB_G0284459 Neighboring gene uncharacterized LOC102659528 Neighboring gene deSI-like protein At4g17486 Neighboring gene nudix hydrolase 8 Neighboring gene nudix hydrolase 8-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine/serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatidylglycerophosphate phosphatase PTPMT1; phosphatidylglycerophosphate phosphatase PTPMT2
    Names
    putative dual specificity protein phosphatase DSP8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038241.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      6101034..6106107
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003524011.5 → XP_003524059.1  phosphatidylglycerophosphate phosphatase PTPMT2 isoform X1

      See identical proteins and their annotated locations for XP_003524059.1

      UniProtKB/TrEMBL
      I1K0T6
      Conserved Domains (1) summary
      cd14524
      Location:59 → 201
      PTPMT1; protein-tyrosine phosphatase mitochondrial 1

    2. XM_006579582.4 → XP_006579645.1  phosphatidylglycerophosphate phosphatase PTPMT2 isoform X1

      See identical proteins and their annotated locations for XP_006579645.1

      UniProtKB/TrEMBL
      I1K0T6
      Conserved Domains (1) summary
      cd14524
      Location:59 → 201
      PTPMT1; protein-tyrosine phosphatase mitochondrial 1

    3. XM_014775507.3 → XP_014630993.1  phosphatidylglycerophosphate phosphatase PTPMT2 isoform X1

      UniProtKB/TrEMBL
      I1K0T6
      Conserved Domains (1) summary
      cd14524
      Location:59 → 201
      PTPMT1; protein-tyrosine phosphatase mitochondrial 1

    4. XM_041015935.1 → XP_040871869.1  phosphatidylglycerophosphate phosphatase PTPMT1 isoform X2

      UniProtKB/TrEMBL
      C6THY9
      Conserved Domains (1) summary
      cl28904
      Location:2 → 32
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily
    Nucleotide Protein
    Heading Accession and Version

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