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    LOC100786636 BTB/POZ and MATH domain-containing protein 3 [ Glycine max (soybean) ]

    Gene ID: 100786636, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100786636
    Gene description
    BTB/POZ and MATH domain-containing protein 3
    Locus tag
    GLYMA_18G034700v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100786636 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 18 NC_038254.2 (2679136..2684866, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 18 NC_038254.1 (2689938..2695749, complement)

    Chromosome 18 - NC_038254.2Genomic Context describing neighboring genes Neighboring gene wall-associated receptor kinase-like 20 Neighboring gene ultraviolet-B receptor UVR8 Neighboring gene probable methyltransferase PMT11 Neighboring gene protein HESO1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ and MATH domain-containing protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038254.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      2679136..2684866 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003552724.5 → XP_003552772.1  BTB/POZ and MATH domain-containing protein 3 isoform X1

      See identical proteins and their annotated locations for XP_003552772.1

      UniProtKB/TrEMBL
      I1MZ95, K7MPP0
      Conserved Domains (3) summary
      cd00121
      Location:31 → 164
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      cd18280
      Location:185 → 305
      BTB_POZ_BPM_plant; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in plant BTB/POZ-MATH (BPM) protein family
      cd14736
      Location:305 → 368
      BACK_AtBPM-like; BACK (BTB and C-terminal Kelch) domain found in plant BTB/POZ-MATH (BPM) protein family

    2. XM_014770948.3 → XP_014626434.1  BTB/POZ and MATH domain-containing protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A0R0F3N2, I1MZ95
      Conserved Domains (3) summary
      cd00121
      Location:31 → 164
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      cd18280
      Location:185 → 305
      BTB_POZ_BPM_plant; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in plant BTB/POZ-MATH (BPM) protein family
      cl28903
      Location:305 → 341
      BACK; BACK (BTB and C-terminal Kelch) domain

    RNA

    1. XR_419312.4 RNA Sequence

    2. XR_419313.4 RNA Sequence

    3. XR_419311.4 RNA Sequence

    4. XR_001386190.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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