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    LOC100786000 G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [ Glycine max (soybean) ]

    Gene ID: 100786000, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100786000
    Gene description
    G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
    Locus tag
    GLYMA_12G144400v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 12 NC_038248.2 (19037642..19041405, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 12 NC_038248.1 (19069653..19073616, complement)

    Chromosome 12 - NC_038248.2Genomic Context describing neighboring genes Neighboring gene uncharacterized mitochondrial protein AtMg00810-like Neighboring gene uncharacterized LOC121173155 Neighboring gene small nucleolar RNA R71 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in recognition of pollen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038248.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      19037642..19041405 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006592511.3 → XP_006592574.1  G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1

      UniProtKB/TrEMBL
      A0A0R0H5B6, I1LSY1
      Conserved Domains (5) summary
      cd01098
      Location:333 → 419
      PAN_AP_plant; Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and ...
      cd14066
      Location:509 → 776
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00954
      Location:208 → 315
      S_locus_glycop; S-locus glycoprotein domain
      pfam01453
      Location:69 → 175
      B_lectin; D-mannose binding lectin
      pfam11883
      Location:780 → 820
      DUF3403; Domain of unknown function (DUF3403)

    2. XM_006592512.4 → XP_006592575.1  G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2

      UniProtKB/TrEMBL
      A0A0R0H5B6, A0A0R0HEH1
      Conserved Domains (5) summary
      cd01098
      Location:333 → 419
      PAN_AP_plant; Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and ...
      cd14066
      Location:508 → 775
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00954
      Location:208 → 315
      S_locus_glycop; S-locus glycoprotein domain
      pfam01453
      Location:69 → 175
      B_lectin; D-mannose binding lectin
      pfam11883
      Location:779 → 819
      DUF3403; Domain of unknown function (DUF3403)

    3. XM_006592514.3 → XP_006592577.1  G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X4

      See identical proteins and their annotated locations for XP_006592577.1

      UniProtKB/TrEMBL
      A0A0R0H5B6, K7LUX4
      Conserved Domains (4) summary
      cd01098
      Location:333 → 419
      PAN_AP_plant; Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and ...
      pfam00954
      Location:208 → 315
      S_locus_glycop; S-locus glycoprotein domain
      pfam01453
      Location:69 → 175
      B_lectin; D-mannose binding lectin
      cl21453
      Location:509 → 668
      PKc_like; Protein Kinases, catalytic domain

    4. XM_006592515.3 → XP_006592578.1  G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X3

      See identical proteins and their annotated locations for XP_006592578.1

      UniProtKB/TrEMBL
      A0A0R0H5B6, K7LUX4
      Conserved Domains (4) summary
      cd01098
      Location:333 → 419
      PAN_AP_plant; Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and ...
      pfam00954
      Location:208 → 315
      S_locus_glycop; S-locus glycoprotein domain
      pfam01453
      Location:69 → 175
      B_lectin; D-mannose binding lectin
      cl21453
      Location:509 → 668
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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