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    LOC100784739 DEAD-box ATP-dependent RNA helicase 38 [ Glycine max (soybean) ]

    Gene ID: 100784739, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100784739
    Gene description
    DEAD-box ATP-dependent RNA helicase 38
    Locus tag
    GLYMA_19G027600v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    Location:
    chromosome: 19
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 19 NC_038255.2 (3438363..3442744)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 19 NC_038255.1 (3454309..3458806)

    Chromosome 19 - NC_038255.2Genomic Context describing neighboring genes Neighboring gene cell wall protein RBR3 Neighboring gene uncharacterized mitochondrial protein AtMg00810-like Neighboring gene EID1-like F-box protein 2 Neighboring gene uncharacterized LOC100795132

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DEAD-box ATP-dependent RNA helicase 38

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038255.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      3438363..3442744
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006603832.4 → XP_006603895.1  DEAD-box ATP-dependent RNA helicase 38

      See identical proteins and their annotated locations for XP_006603895.1

      UniProtKB/TrEMBL
      I1N696, I1N697
      Conserved Domains (2) summary
      cd18787
      Location:313 → 453
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd17963
      Location:98 → 301
      DEADc_DDX19_DDX25; DEAD-box helicase domain of ATP-dependent RNA helicases DDX19 and DDX25

    2. XM_003554704.5 → XP_003554752.1  DEAD-box ATP-dependent RNA helicase 38

      See identical proteins and their annotated locations for XP_003554752.1

      UniProtKB/TrEMBL
      I1N696, I1N697
      Conserved Domains (2) summary
      cd18787
      Location:313 → 453
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd17963
      Location:98 → 301
      DEADc_DDX19_DDX25; DEAD-box helicase domain of ATP-dependent RNA helicases DDX19 and DDX25
    Nucleotide Protein
    Heading Accession and Version

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