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    LOC100784105 callose synthase 7 [ Glycine max (soybean) ]

    Gene ID: 100784105, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100784105
    Gene description
    callose synthase 7
    Locus tag
    GLYMA_08G308700v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100784105 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    42
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (42143912..42168606)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (42739700..42764481)

    Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At4g10955 Neighboring gene probable sucrose-phosphate synthase 3 Neighboring gene uncharacterized LOC100305825 Neighboring gene probable receptor-like protein kinase At2g42960

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1,3-beta-D-glucan synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in (1->3)-beta-D-glucan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 1,3-beta-D-glucan synthase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    callose synthase 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      42143912..42168606
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026129771.2 → XP_025985556.1  callose synthase 7

      UniProtKB/TrEMBL
      A0A368UHV8, A0A368UKU2
      Conserved Domains (3) summary
      pfam02364
      Location:1044 → 1778
      Glucan_synthase; 1,3-beta-glucan synthase component
      pfam04652
      Location:58 → 177
      Vta1; Vta1 like
      pfam14288
      Location:334 → 446
      FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

    2. XM_006586010.4 → XP_006586073.1  callose synthase 7

      UniProtKB/TrEMBL
      A0A368UHV8, A0A368UKU2
      Conserved Domains (3) summary
      pfam02364
      Location:1044 → 1778
      Glucan_synthase; 1,3-beta-glucan synthase component
      pfam04652
      Location:58 → 177
      Vta1; Vta1 like
      pfam14288
      Location:334 → 446
      FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
    Nucleotide Protein
    Heading Accession and Version

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