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    LOC100779653 transcription factor bHLH30 [ Glycine max (soybean) ]

    Gene ID: 100779653, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100779653
    Gene description
    transcription factor bHLH30
    Locus tag
    GLYMA_01G088300v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100779653 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 1 NC_016088.4 (26864271..26868401, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 1 NC_016088.3 (26796258..26800651, complement)

    Chromosome 1 - NC_016088.4Genomic Context describing neighboring genes Neighboring gene SUPPRESSOR OF GAMMA RESPONSE 1 Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC100780188 Neighboring gene uncharacterized LOC106798224 Neighboring gene microRNA MIR9726

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor bHLH30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_016088.4 Reference Glycine_max_v4.0 Primary Assembly

      Range
      26864271..26868401 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041012627.1 → XP_040868561.1  transcription factor bHLH30

      UniProtKB/TrEMBL
      K7K2S1
      Conserved Domains (2) summary
      cd04873
      Location:263 → 314
      ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
      cd11455
      Location:173 → 252
      bHLH_AtAIG1_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein AIG1 and similar proteins

    2. XM_006573206.4 → XP_006573269.1  transcription factor bHLH30

      See identical proteins and their annotated locations for XP_006573269.1

      UniProtKB/TrEMBL
      K7K2S1
      Conserved Domains (2) summary
      cd04873
      Location:263 → 314
      ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
      cd11455
      Location:173 → 252
      bHLH_AtAIG1_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein AIG1 and similar proteins

    3. XM_006573205.4 → XP_006573268.1  transcription factor bHLH30

      See identical proteins and their annotated locations for XP_006573268.1

      UniProtKB/TrEMBL
      K7K2S1
      Conserved Domains (2) summary
      cd04873
      Location:263 → 314
      ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
      cd11455
      Location:173 → 252
      bHLH_AtAIG1_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein AIG1 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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