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    LOC100777209 callose synthase 3 [ Glycine max (soybean) ]

    Gene ID: 100777209, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100777209
    Gene description
    callose synthase 3
    Locus tag
    GLYMA_18G300200v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100777209 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    42
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 18 NC_038254.2 (58057963..58089453)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 18 NC_038254.1 (57789178..57820753)

    Chromosome 18 - NC_038254.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106797181 Neighboring gene casein kinase 1-like protein HD16 Neighboring gene putative E3 ubiquitin-protein ligase LIN-1 Neighboring gene protein NRT1/ PTR FAMILY 7.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1,3-beta-D-glucan synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in (1->3)-beta-D-glucan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 1,3-beta-D-glucan synthase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    callose synthase 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038254.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      58057963..58089453
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003551811.5 → XP_003551859.1  callose synthase 3

      UniProtKB/TrEMBL
      A0A0R0FG45, K7MVL3
      Conserved Domains (3) summary
      pfam02364
      Location:1059 → 1817
      Glucan_synthase; 1,3-beta-glucan synthase component
      pfam04652
      Location:51 → 178
      Vta1; Vta1 like
      pfam14288
      Location:322 → 435
      FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
    Nucleotide Protein
    Heading Accession and Version

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