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    PHR11 MYB-CC domain-containing transcription factor PHR11 [ Glycine max (soybean) ]

    Gene ID: 100776601, updated on 7-Dec-2023

    Summary

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    Gene symbol
    PHR11
    Gene description
    MYB-CC domain-containing transcription factor PHR11
    Locus tag
    GLYMA_07G229800v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    GmPHR11
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    Genomic context

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    See PHR11 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 7 NC_038243.2 (41319440..41321228, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 7 NC_038243.1 (40998847..41000635, complement)

    Chromosome 7 - NC_038243.2Genomic Context describing neighboring genes Neighboring gene cyclic dof factor 2 Neighboring gene uncharacterized LOC106799491 Neighboring gene uncharacterized LOC121175178 Neighboring gene uncharacterized LOC121175179 Neighboring gene microRNA MIR5783 Neighboring gene zinc-finger homeodomain protein 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. GmPHR25, a GmPHR member up-regulated by phosphate starvation, controls phosphate homeostasis in soybean. Xue YB, et al. J Exp Bot, 2017 Oct 13. PMID 28992334, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MYB-CC domain-containing transcription factor PHR11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001363717.1 → NP_001350646.1  MYB-CC domain-containing transcription factor PHR11

      Status: VALIDATED

      Source sequence(s)
      CX547261, FG999570
      UniProtKB/TrEMBL
      C6TKF7, I1KMH3
      Conserved Domains (2) summary
      TIGR01557
      Location:21 → 77
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:119 → 165
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038243.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      41319440..41321228 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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