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    Katnb1 katanin regulatory subunit B1 [ Cricetulus griseus (Chinese hamster) ]

    Gene ID: 100763993, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Katnb1
    Gene description
    katanin regulatory subunit B1
    Locus tag
    I79_018011
    See related
    Ensembl:ENSCGRG00015001635
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cricetulus griseus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
    Orthologs
    human mouse all
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    Genomic context

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    See Katnb1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614770.1 (251831..271602, complement)
    104 current CriGri-PICRH-1.0 (GCF_003668045.3) 3 NC_048596.1 (171288938..171308670)

    NW_003614770.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene kinesin family member C3 Neighboring gene dynein regulatory complex subunit 7 Neighboring gene adhesion G protein-coupled receptor G3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule depolymerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in microtubule severing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of katanin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    katanin p80 WD40 repeat-containing subunit B1
    Names
    Katanin p80 WD40-containing subunit B1
    katanin WD40-containing subunit B1
    katanin p80 (WD repeat containing) subunit B 1
    katanin p80 (WD40-containing) subunit B 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CriGri_1.0 Primary Assembly

    Genomic

    1. NW_003614770.1 Reference CriGri_1.0 Primary Assembly

      Range
      251831..271602 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007650444.4 → XP_007648634.1  katanin p80 WD40 repeat-containing subunit B1

      See identical proteins and their annotated locations for XP_007648634.1

      UniProtKB/TrEMBL
      A0A8C2LFY0, A0A8C2LKX1
      Conserved Domains (5) summary
      COG2319
      Location:6 → 295
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:7 → 257
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam05104
      Location:369 → 457
      Rib_recp_KP_reg; Ribosome receptor lysine/proline rich region
      pfam13925
      Location:497 → 648
      Katanin_con80; con80 domain of Katanin
      sd00039
      Location:67 → 103
      7WD40; WD40 repeat [structural motif]

    2. XM_007650443.4 → XP_007648633.1  katanin p80 WD40 repeat-containing subunit B1

      See identical proteins and their annotated locations for XP_007648633.1

      UniProtKB/TrEMBL
      A0A8C2LFY0, A0A8C2LKX1
      Conserved Domains (5) summary
      COG2319
      Location:6 → 295
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:7 → 257
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam05104
      Location:369 → 457
      Rib_recp_KP_reg; Ribosome receptor lysine/proline rich region
      pfam13925
      Location:497 → 648
      Katanin_con80; con80 domain of Katanin
      sd00039
      Location:67 → 103
      7WD40; WD40 repeat [structural motif]

    3. XM_003509800.5 → XP_003509848.1  katanin p80 WD40 repeat-containing subunit B1

      See identical proteins and their annotated locations for XP_003509848.1

      UniProtKB/TrEMBL
      A0A8C2LFY0, A0A8C2LKX1
      Conserved Domains (5) summary
      COG2319
      Location:6 → 295
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:7 → 257
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam05104
      Location:369 → 457
      Rib_recp_KP_reg; Ribosome receptor lysine/proline rich region
      pfam13925
      Location:497 → 648
      Katanin_con80; con80 domain of Katanin
      sd00039
      Location:67 → 103
      7WD40; WD40 repeat [structural motif]

    Alternate CriGri-PICRH-1.0

    Genomic

    1. NC_048596.1 Alternate CriGri-PICRH-1.0

      Range
      171288938..171308670
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027405693.2 → XP_027261494.1  katanin p80 WD40 repeat-containing subunit B1

      UniProtKB/TrEMBL
      A0A8C2LFY0, A0A8C2LKX1
      Related
      ENSCGRP00015001994.1, ENSCGRT00015002484.2

    2. XM_027405692.2 → XP_027261493.1  katanin p80 WD40 repeat-containing subunit B1

      UniProtKB/TrEMBL
      A0A8C2LFY0, A0A8C2LKX1

    3. XM_027405691.2 → XP_027261492.1  katanin p80 WD40 repeat-containing subunit B1

      UniProtKB/TrEMBL
      A0A8C2LFY0, A0A8C2LKX1
    Nucleotide Protein Strain
    Heading Accession and Version

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