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    Trappc11 trafficking protein particle complex subunit 11 [ Cricetulus griseus (Chinese hamster) ]

    Gene ID: 100752972, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Trappc11
    Gene description
    trafficking protein particle complex subunit 11
    Locus tag
    I79_000712
    See related
    Ensembl:ENSCGRG00015020811
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cricetulus griseus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
    Orthologs
    human mouse all
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    Genomic context

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    See Trappc11 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613593.1 (2227198..2268418)
    104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276807.1 (39189912..39231160)

    NW_003613593.1Genomic Context describing neighboring genes Neighboring gene inhibitor of growth family member 2 Neighboring gene RWD domain containing 4 Neighboring gene small nucleolar RNA SNORA70 Neighboring gene lys-63-specific deubiquitinase BRCC36-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    trafficking protein particle complex subunit 11
    Names
    UPF0636 protein C4orf41 homolog
    UPF0636 protein C4orf41-like
    trafficking protein particle complex 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CriGri_1.0 Primary Assembly

    Genomic

    1. NW_003613593.1 Reference CriGri_1.0 Primary Assembly

      Range
      2227198..2268418
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003495469.5 → XP_003495517.1  trafficking protein particle complex subunit 11 isoform X1

      See identical proteins and their annotated locations for XP_003495517.1

      UniProtKB/TrEMBL
      A0A3L7IJD9, G3GSU1
      Conserved Domains (2) summary
      pfam11817
      Location:263 → 522
      Foie-gras_1; Foie gras liver health family 1
      pfam12742
      Location:1036 → 1095
      Gryzun-like; Gryzun, putative Golgi trafficking

    2. XM_007641305.4 → XP_007639495.1  trafficking protein particle complex subunit 11 isoform X2

      See identical proteins and their annotated locations for XP_007639495.1

      UniProtKB/TrEMBL
      A0A9J7F4G7, G3GSU1
      Conserved Domains (2) summary
      pfam11817
      Location:263 → 522
      Foie-gras_1; Foie gras liver health family 1
      pfam12742
      Location:1036 → 1095
      Gryzun-like; Gryzun, putative Golgi trafficking

    3. XM_007641299.4 → XP_007639489.1  trafficking protein particle complex subunit 11 isoform X1

      See identical proteins and their annotated locations for XP_007639489.1

      UniProtKB/TrEMBL
      A0A3L7IJD9, G3GSU1
      Conserved Domains (2) summary
      pfam11817
      Location:263 → 522
      Foie-gras_1; Foie gras liver health family 1
      pfam12742
      Location:1036 → 1095
      Gryzun-like; Gryzun, putative Golgi trafficking

    4. XM_035454799.1 → XP_035310690.1  trafficking protein particle complex subunit 11 isoform X1

      UniProtKB/TrEMBL
      A0A3L7IJD9, G3GSU1
      Conserved Domains (2) summary
      pfam11817
      Location:263 → 522
      Foie-gras_1; Foie gras liver health family 1
      pfam12742
      Location:1036 → 1095
      Gryzun-like; Gryzun, putative Golgi trafficking

    5. XM_027435431.2 → XP_027291232.1  trafficking protein particle complex subunit 11 isoform X1

      UniProtKB/TrEMBL
      A0A3L7IJD9, G3GSU1
      Conserved Domains (2) summary
      pfam11817
      Location:263 → 522
      Foie-gras_1; Foie gras liver health family 1
      pfam12742
      Location:1036 → 1095
      Gryzun-like; Gryzun, putative Golgi trafficking

    Alternate CriGri-PICRH-1.0

    Genomic

    1. NW_023276807.1 Alternate CriGri-PICRH-1.0

      Range
      39189912..39231160
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027391071.2 → XP_027246872.1  trafficking protein particle complex subunit 11 isoform X1

      UniProtKB/TrEMBL
      A0A3L7IJD9, G3GSU1
      Related
      ENSCGRP00015027460.1, ENSCGRT00015033640.2
      Conserved Domains (2) summary
      pfam11817
      Location:263 → 522
      Foie-gras_1; Foie gras liver health family 1
      pfam12742
      Location:1036 → 1095
      Gryzun-like; Gryzun, putative Golgi trafficking

    2. XM_027391072.2 → XP_027246873.1  trafficking protein particle complex subunit 11 isoform X2

      UniProtKB/TrEMBL
      A0A9J7F4G7, G3GSU1

    3. XM_027391069.2 → XP_027246870.1  trafficking protein particle complex subunit 11 isoform X1

      UniProtKB/TrEMBL
      A0A3L7IJD9, G3GSU1
      Related
      ENSCGRP00015050850.1, ENSCGRT00015062580.1
      Conserved Domains (2) summary
      pfam11817
      Location:263 → 522
      Foie-gras_1; Foie gras liver health family 1
      pfam12742
      Location:1036 → 1095
      Gryzun-like; Gryzun, putative Golgi trafficking

    4. XM_035452177.1 → XP_035308068.1  trafficking protein particle complex subunit 11 isoform X1

      UniProtKB/TrEMBL
      A0A3L7IJD9, G3GSU1
      Conserved Domains (2) summary
      pfam11817
      Location:263 → 522
      Foie-gras_1; Foie gras liver health family 1
      pfam12742
      Location:1036 → 1095
      Gryzun-like; Gryzun, putative Golgi trafficking

    5. XM_027391070.2 → XP_027246871.1  trafficking protein particle complex subunit 11 isoform X1

      UniProtKB/TrEMBL
      A0A3L7IJD9, G3GSU1
      Conserved Domains (2) summary
      pfam11817
      Location:263 → 522
      Foie-gras_1; Foie gras liver health family 1
      pfam12742
      Location:1036 → 1095
      Gryzun-like; Gryzun, putative Golgi trafficking
    Nucleotide Protein Strain
    Heading Accession and Version

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