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    LOC100748480 protein tramtrack [ Bombus impatiens (common eastern bumble bee) ]

    Gene ID: 100748480, updated on 1-Oct-2024

    Summary

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    Gene symbol
    LOC100748480
    Gene description
    protein tramtrack
    See related
    EnsemblRapid:ENSBIMG00000016752
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bombus impatiens
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Pyrobombus
    Orthologs
    honey bee all
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    Genomic context

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    See LOC100748480 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current BIMP_2.2 (GCF_000188095.3) Unplaced Scaffold NT_176573.1 (277456..296976, complement)

    NT_176573.1Genomic Context describing neighboring genes Neighboring gene probable G-protein coupled receptor CG31760 Neighboring gene uncharacterized LOC117151353 Neighboring gene uncharacterized LOC117151354 Neighboring gene uncharacterized LOC105680416 Neighboring gene humpty dumpty

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NT_176573 Unplaced Scaffold Reference BIMP_2.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genes involved in convergent evolution of eusociality in bees. Woodard SH, et al. Proc Natl Acad Sci U S A, 2011 May 3. PMID 21482769, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein jim lovell; protein tramtrack, beta isoform; zinc finger and BTB domain-containing protein 14

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bombus impatiens Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BIMP_2.2

    Genomic

    1. NT_176573.1 Reference BIMP_2.2

      Range
      277456..296976 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024365865.2 → XP_024221633.1  protein jim lovell isoform X4

      UniProtKB/TrEMBL
      A0A6P6FA30
      Conserved Domains (3) summary
      COG5048
      Location:258 → 394
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:338 → 358
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:48 → 141
      BTB; BTB/POZ domain

    2. XM_012382480.3 → XP_012237903.2  protein tramtrack, beta isoform isoform X1

      UniProtKB/TrEMBL
      A0A6P3UNM1
      Conserved Domains (4) summary
      COG5048
      Location:271 → 426
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:370 → 390
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:48 → 141
      BTB; BTB/POZ domain
      pfam13465
      Location:382 → 407
      zf-H2C2_2; Zinc-finger double domain

    3. XM_003487422.4 → XP_003487470.1  protein tramtrack, beta isoform isoform X3

      See identical proteins and their annotated locations for XP_003487470.1

      UniProtKB/TrEMBL
      A0A6P3DTL6
      Related
      ENSBIMP00000024998.1, ENSBIMT00000038579.1
      Conserved Domains (6) summary
      smart00225
      Location:32 → 114
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG5048
      Location:244 → 399
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:343 → 363
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:341 → 363
      zf-C2H2; Zinc finger, C2H2 type
      pfam00651
      Location:21 → 114
      BTB; BTB/POZ domain
      pfam13465
      Location:355 → 380
      zf-H2C2_2; Zinc-finger double domain

    4. XM_012382481.3 → XP_012237904.2  zinc finger and BTB domain-containing protein 14 isoform X2

      UniProtKB/TrEMBL
      A0A6P3UP99
      Conserved Domains (4) summary
      COG5048
      Location:255 → 409
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:353 → 373
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:48 → 141
      BTB; BTB/POZ domain
      pfam13465
      Location:365 → 390
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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