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    Ptpn5 protein tyrosine phosphatase non-receptor type 5 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100716019, updated on 3-Apr-2024

    Summary

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    Gene symbol
    Ptpn5
    Gene description
    protein tyrosine phosphatase non-receptor type 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Ptpn5 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947492.1 (92261103..92316487)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176192.1 (231828..298620)

    NW_026947492.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene uncharacterized LOC134477741 Neighboring gene uncharacterized LOC134477742 Neighboring gene transmembrane protein 86A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-tyrosine dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tyrosine-protein phosphatase non-receptor type 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947492.1 Reference mCavPor4.1

      Range
      92261103..92316487
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013149800.3 → XP_013005254.3  tyrosine-protein phosphatase non-receptor type 5 isoform X1

      UniProtKB/TrEMBL
      H0VK19

    2. XM_063256814.1 → XP_063112884.1  tyrosine-protein phosphatase non-receptor type 5 isoform X3

    3. XM_063256813.1 → XP_063112883.1  tyrosine-protein phosphatase non-receptor type 5 isoform X2

    4. XM_063256815.1 → XP_063112885.1  tyrosine-protein phosphatase non-receptor type 5 isoform X4

    Nucleotide Protein
    Heading Accession and Version

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