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    atf7a activating transcription factor 7a [ Oreochromis niloticus (Nile tilapia) ]

    Gene ID: 100701923, updated on 12-Sep-2024

    Summary

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    Gene symbol
    atf7a
    Gene description
    activating transcription factor 7a
    See related
    Ensembl:ENSONIG00000011905
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oreochromis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
    Also known as
    atf7
    Orthologs
    zebrafish all
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    Genomic context

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    See atf7a in Genome Data Viewer
    Location:
    chromosome: LG20
    Exon count:
    13
    Annotation release Status Assembly LG Location
    104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG20 NC_031984.2 (20621397..20642395, complement)
    103 previous assembly ASM185804v2 (GCF_001858045.1) LG20 NC_031984.1 (24353268..24374260)

    Linkage Group LG20 - NC_031984.2Genomic Context describing neighboring genes Neighboring gene sodium channel, voltage gated, type VIII, alpha subunit a Neighboring gene transmembrane protease serine 11D Neighboring gene disco-interacting protein 2 homolog Ba Neighboring gene uncharacterized LOC112843372 Neighboring gene ankyrin repeat and SOCS box containing 8 Neighboring gene La ribonucleoprotein 4Aa

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cAMP response element binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclic AMP-dependent transcription factor ATF-7
    Names
    activating transcription factor 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_niloticus_UMD_NMBU Primary Assembly

    Genomic

    1. NC_031984.2 Reference O_niloticus_UMD_NMBU Primary Assembly

      Range
      20621397..20642395 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005478121.3 → XP_005478178.1  cyclic AMP-dependent transcription factor ATF-7

      See identical proteins and their annotated locations for XP_005478178.1

      UniProtKB/TrEMBL
      I3K1J4
      Related
      ENSONIP00000048124.1, ENSONIT00000062834.1
      Conserved Domains (3) summary
      cd12192
      Location:47 → 83
      GCN4_cent; GCN4 central activation domain-like acidic activation domain
      cd14687
      Location:332 → 392
      bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
      sd00019
      Location:9 → 31
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_005478122.4 → XP_005478179.1  cyclic AMP-dependent transcription factor ATF-7

      See identical proteins and their annotated locations for XP_005478179.1

      UniProtKB/TrEMBL
      I3K1J4
      Conserved Domains (3) summary
      cd12192
      Location:47 → 83
      GCN4_cent; GCN4 central activation domain-like acidic activation domain
      cd14687
      Location:332 → 392
      bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
      sd00019
      Location:9 → 31
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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