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    LOC100690892 gap junction delta-3 protein [ Oreochromis niloticus (Nile tilapia) ]

    Gene ID: 100690892, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC100690892
    Gene description
    gap junction delta-3 protein
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oreochromis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
    Expression
    Biased expression in skin (RPKM 1.7), whole embryo (RPKM 1.0) and 1 other tissue See more
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    Genomic context

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    See LOC100690892 in Genome Data Viewer
    Location:
    chromosome: LG8
    Exon count:
    4
    Annotation release Status Assembly LG Location
    104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG8 NC_031973.2 (19750513..19754683)
    103 previous assembly ASM185804v2 (GCF_001858045.1) LG8 NC_031973.1 (20421216..20424415)

    Linkage Group LG8 - NC_031973.2Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 3Ca Neighboring gene DNA topoisomerase II alpha Neighboring gene gap junction delta-3 protein-like Neighboring gene gap junction delta-3 protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
    • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
    • BioProject: PRJNA78915
    • Analysis date: Fri Dec 29 00:23:36 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell communication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of connexin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    gap junction delta-3 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_niloticus_UMD_NMBU Primary Assembly

    Genomic

    1. NC_031973.2 Reference O_niloticus_UMD_NMBU Primary Assembly

      Range
      19750513..19754683
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025909507.1 → XP_025765292.1  gap junction delta-3 protein

      Conserved Domains (1) summary
      pfam00029
      Location:3 → 203
      Connexin; Connexin

    2. XM_005448191.4 → XP_005448248.1  gap junction delta-3 protein

      See identical proteins and their annotated locations for XP_005448248.1

      Conserved Domains (1) summary
      pfam00029
      Location:3 → 203
      Connexin; Connexin

    3. XM_019362748.2 → XP_019218293.1  gap junction delta-3 protein

      Conserved Domains (1) summary
      pfam00029
      Location:3 → 203
      Connexin; Connexin
    Nucleotide Protein
    Heading Accession and Version

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