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    pasilla RNA-binding protein Nova-1-like protein passilla [ Bombus terrestris (buff-tailed bumblebee) ]

    Gene ID: 100651952, updated on 10-Oct-2024

    Summary

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    Gene symbol
    pasilla
    Gene description
    RNA-binding protein Nova-1-like protein passilla
    See related
    EnsemblRapid:ENSBTSG00005021486
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bombus terrestris
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Bombus
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    See pasilla in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current iyBomTerr1.2 (GCF_910591885.1) 5 NC_063273.1 (6686414..6700534)
    102 previous assembly Bter_1.0 (GCF_000214255.1) Linkage Group LG B05 NC_015766.1 (6168817..6188528)

    Chromosome 5 - NC_063273.1Genomic Context describing neighboring genes Neighboring gene Tubulin tyrosine ligase-like 5 Neighboring gene uncharacterized LOC100652191 Neighboring gene uncharacterized LOC105665741 Neighboring gene Molybdenum cofactor synthesis 2B Neighboring gene probable maleylacetoacetate isomerase 2 Neighboring gene scaffold protein salvador

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein Pasilla
    Names
    RNA-binding protein Nova-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bombus terrestris Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference iyBomTerr1.2

    Genomic

    1. NC_063273.1 Reference iyBomTerr1.2

      Range
      6686414..6700534
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003395519.4 → XP_003395567.1  RNA-binding protein Pasilla isoform X1

      See identical proteins and their annotated locations for XP_003395567.1

      UniProtKB/TrEMBL
      A0A9B0BWT6
      Related
      ENSBTSP00005053424.1, ENSBTST00005043846.1
      Conserved Domains (3) summary
      cd09031
      Location:427 → 496
      KH-I_NOVA_rpt3; third type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
      cd22435
      Location:45 → 116
      KH-I_NOVA_rpt1; first type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
      cd22436
      Location:140 → 209
      KH-I_NOVA_rpt2; second type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)

    2. XM_012308612.3 → XP_012164002.1  RNA-binding protein Pasilla isoform X3

      See identical proteins and their annotated locations for XP_012164002.1

      UniProtKB/TrEMBL
      A0A9B2MNZ5
      Related
      ENSBTSP00005055479.1, ENSBTST00005080659.1
      Conserved Domains (2) summary
      cd22435
      Location:45 → 116
      KH-I_NOVA_rpt1; first type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
      cd22436
      Location:140 → 209
      KH-I_NOVA_rpt2; second type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)

    3. XM_012308611.3 → XP_012164001.1  RNA-binding protein Pasilla isoform X2

      See identical proteins and their annotated locations for XP_012164001.1

      UniProtKB/TrEMBL
      A0A9B2MKI1
      Related
      ENSBTSP00005041223.1, ENSBTST00005054689.1
      Conserved Domains (3) summary
      cd09031
      Location:392 → 461
      KH-I_NOVA_rpt3; third type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
      cd22435
      Location:10 → 81
      KH-I_NOVA_rpt1; first type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
      cd22436
      Location:105 → 174
      KH-I_NOVA_rpt2; second type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    Nucleotide Protein
    Heading Accession and Version

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