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    tmem220 transmembrane protein 220 [ Danio rerio (zebrafish) ]

    Gene ID: 100536710, updated on 2-Nov-2024

    Summary

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    Official Symbol
    tmem220provided by ZNC
    Official Full Name
    transmembrane protein 220provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-131121-194
    See related
    Ensembl:ENSDARG00000088981 AllianceGenome:ZFIN:ZDB-GENE-131121-194
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch1073-144j5.1
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM220 (transmembrane protein 220). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See tmem220 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (10637320..10641930)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (10670765..10676112)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene elaC ribonuclease Z 2 Neighboring gene mitogen-activated protein kinase kinase 4a Neighboring gene uncharacterized LOC110438746 Neighboring gene butyrophilin-like protein 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 220

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001328099.1 → NP_001315028.1  transmembrane protein 220

      Status: PROVISIONAL

      Source sequence(s)
      CU633763, EH492833
      UniProtKB/TrEMBL
      A0A8M1RSF6, E7FET6
      Related
      ENSDARP00000112176.1, ENSDART00000129257.3
      Conserved Domains (1) summary
      pfam15071
      Location:24 → 107
      TMEM220; Transmembrane family 220, helix

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      10637320..10641930
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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