U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    mmadhcb metabolism of cobalamin associated Db [ Ictalurus punctatus (channel catfish) ]

    Gene ID: 100529035, updated on 20-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    mmadhcb
    Gene description
    metabolism of cobalamin associated Db
    See related
    EnsemblRapid:ENSIPUG00020020169
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ictalurus punctatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
    Also known as
    mmad; mmadhc
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Coco_2.0 (GCF_001660625.3) 6 NC_030421.2 (13202326..13211702, complement)
    101 previous assembly IpCoco_1.2 (GCF_001660625.2) 6 NC_030421.1 (20624764..20634139)

    Chromosome 6 - NC_030421.2Genomic Context describing neighboring genes Neighboring gene LY6/PLAUR domain containing 6B Neighboring gene uncharacterized LOC128632913 Neighboring gene LY6/PLAUR domain containing 6 Neighboring gene Rho family GTPase 3b Neighboring gene uncharacterized LOC108266221

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
    2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cobalamin metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    metabolism of cobalamin associated Db
    Names
    metabolism of cobalamin associated D
    methylmalonic aciduria and homocystinuria, cblD type
    mitochondrial methylmalonic aciduria and homocystinuria type d protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001201305.1 → NP_001188234.1  metabolism of cobalamin associated Db

      See identical proteins and their annotated locations for NP_001188234.1

      Status: PROVISIONAL

      Source sequence(s)
      GU589471
      UniProtKB/TrEMBL
      E3TGI5
      Related
      ENSIPUP00020040197.1, ENSIPUT00020048594.1
      Conserved Domains (1) summary
      pfam10229
      Location:24 → 288
      DUF2246; Uncharacterized conserved protein (DUF2246)

    RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coco_2.0 Primary Assembly

    Genomic

    1. NC_030421.2 Reference Coco_2.0 Primary Assembly

      Range
      13202326..13211702 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017469047.3 → XP_017324536.1  metabolism of cobalamin associated Db isoform X1

      UniProtKB/TrEMBL
      A0A2D0R398
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.