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    ACOXL acyl-CoA oxidase like [ Sus scrofa (pig) ]

    Gene ID: 100520554, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ACOXLprovided by VGNC
    Official Full Name
    acyl-CoA oxidase likeprovided by VGNC
    Primary source
    VGNC:VGNC:85023
    See related
    Ensembl:ENSSSCG00000037846
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human mouse all
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    Genomic context

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    See ACOXL in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (45202875..45563062, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (47107541..47551348, complement)

    Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106509733 Neighboring gene uncharacterized LOC110259966 Neighboring gene uncharacterized LOC110260116 Neighboring gene BCL2 like 11 Neighboring gene two pore calcium channel protein 2-like Neighboring gene BUB1 mitotic checkpoint serine/threonine kinase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables acyl-CoA oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables fatty acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid beta-oxidation using acyl-CoA oxidase IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipid homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acyl-coenzyme A oxidase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

      Range
      45202875..45563062 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021087042.1 → XP_020942701.1  acyl-coenzyme A oxidase-like protein isoform X1

      UniProtKB/TrEMBL
      A0A8D1Q866
      Conserved Domains (1) summary
      cl09933
      Location:73 → 673
      ACAD; Acyl-CoA dehydrogenase

    2. XM_021087044.1 → XP_020942703.1  acyl-coenzyme A oxidase-like protein isoform X3

      UniProtKB/TrEMBL
      A0A8D1HF90
      Related
      ENSSSCP00000037706.3, ENSSSCT00000057327.3
      Conserved Domains (1) summary
      cl09933
      Location:16 → 603
      ACAD; Acyl-CoA dehydrogenase

    3. XM_021087045.1 → XP_020942704.1  acyl-coenzyme A oxidase-like protein isoform X4

      UniProtKB/TrEMBL
      A0A8D1HF90, A0A8D1Q808
      Conserved Domains (1) summary
      cl09933
      Location:37 → 579
      ACAD; Acyl-CoA dehydrogenase

    4. XM_021087043.1 → XP_020942702.1  acyl-coenzyme A oxidase-like protein isoform X2

      UniProtKB/TrEMBL
      A0A8D1Q866
      Conserved Domains (1) summary
      cl09933
      Location:73 → 643
      ACAD; Acyl-CoA dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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