LRRC57 leucine rich repeat containing 57 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: LRRC57provided by VGNC
Official Full Name: leucine rich repeat containing 57provided by VGNC
Primary source: VGNC:VGNC:103119
See related: Ensembl:ENSSSCG00000004726
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Ubiquitous expression in lung (RPKM 17.5), subcutaneous adipose (RPKM 10.1) and 8 other tissues See more
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 1

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	1	NC_010443.5 (128839137..128845749)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	1	NC_010443.4 (143731688..143738556)

Chromosome 1 - NC_010443.5 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: leucine-rich repeat-containing protein 57

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001244811.1 → NP_001231740.1 leucine-rich repeat-containing protein 57

See identical proteins and their annotated locations for NP_001231740.1

Status: VALIDATED

Source sequence(s)

AK235771

UniProtKB/TrEMBL

A0A4X1V3Q6, A0A8D1K737, A0A8D1WUH8, F1SI25

Related

ENSSSCP00000005093.2, ENSSSCT00000005219.5

Conserved Domains (3) summary

cd00116
Location:23 → 191

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

sd00033
Location:40 → 63

LRR_RI; leucine-rich repeat [structural motif]

pfam13855
Location:38 → 97

LRR_8; Leucine rich repeat