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    LOC100501591 L-type lectin-domain containing receptor kinase V.9 [ Zea mays ]

    Gene ID: 100501591, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100501591
    Gene description
    L-type lectin-domain containing receptor kinase V.9
    Locus tag
    ZEAMMB73_Zm00001d019411
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G438871
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    Genomic context

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    See LOC100501591 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 7 NC_050102.1 (32405660..32407927)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 7 NC_024465.2 (32690302..32692569)

    Chromosome 7 - NC_050102.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103649859 Neighboring gene uncharacterized LOC103632229 Neighboring gene anthocyanidin 5,3-O-glucosyltransferase Neighboring gene putative lectin-like receptor protein kinase family protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    L-type lectin-domain containing receptor kinase SIT2; uncharacterized protein LOC100501591
    Names
    putative lectin-like receptor protein kinase family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001196278.2 → NP_001183207.1  L-type lectin-domain containing receptor kinase SIT2 precursor

      See identical proteins and their annotated locations for NP_001183207.1

      Status: VALIDATED

      Source sequence(s)
      BT085715
      UniProtKB/TrEMBL
      A0A3L6E5K6, C4J4G8
      Conserved Domains (2) summary
      cd14066
      Location:357 → 636
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00139
      Location:26 → 281
      Lectin_legB; Legume lectin domain

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050102.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      32405660..32407927
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008653580.2 → XP_008651802.1  uncharacterized protein LOC100501591 isoform X1

      UniProtKB/TrEMBL
      A0A3L6E5K6
      Conserved Domains (3) summary
      cd14066
      Location:303 → 582
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00069
      Location:302 → 579
      Pkinase; Protein kinase domain
      pfam00139
      Location:57 → 226
      Lectin_legB; Legume lectin domain
    Nucleotide Protein
    Heading Accession and Version

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