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    bcl9 BCL9 transcription coactivator [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100489374, updated on 17-Aug-2024

    Summary

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    Official Symbol
    bcl9provided by Xenbase
    Official Full Name
    BCL9 transcription coactivatorprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-480846
    See related
    Ensembl:ENSXETG00000016298
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    lgs; xbcl9; legless
    Orthologs
    human mouse all
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    Genomic context

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    See bcl9 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (8246771..8412024, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (4419544..4572267, complement)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene gap junction protein alpha 5 Neighboring gene acid phosphatase 6, lysophosphatidic Neighboring gene transmembrane serine protease 3 Neighboring gene trefoil factor 3, gene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables beta-catenin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within embryonic viscerocranium morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    B-cell CLL/lymphoma 9 protein
    Names
    B cell CLL/lymphoma 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      8246771..8412024 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002940463.5 → XP_002940509.1  B-cell CLL/lymphoma 9 protein

      See identical proteins and their annotated locations for XP_002940509.1

      UniProtKB/TrEMBL
      A0A6I8T1T1, A0A803JQ57
      Related
      ENSXETP00000107390.1, ENSXETT00000120643.1
      Conserved Domains (3) summary
      TIGR01628
      Location:543 → 651
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      PHA03247
      Location:949 → 1427
      PHA03247; large tegument protein UL36; Provisional
      pfam11502
      Location:410 → 448
      BCL9; B-cell lymphoma 9 protein

    2. XM_004918213.2 → XP_004918270.1  B-cell CLL/lymphoma 9 protein

      See identical proteins and their annotated locations for XP_004918270.1

      UniProtKB/TrEMBL
      A0A6I8T1T1, A0A803JQ57
      Related
      ENSXETP00000104412.1, ENSXETT00000106415.1
      Conserved Domains (3) summary
      TIGR01628
      Location:543 → 651
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      PHA03247
      Location:949 → 1427
      PHA03247; large tegument protein UL36; Provisional
      pfam11502
      Location:410 → 448
      BCL9; B-cell lymphoma 9 protein

    3. XM_004918215.4 → XP_004918272.1  B-cell CLL/lymphoma 9 protein

      See identical proteins and their annotated locations for XP_004918272.1

      UniProtKB/TrEMBL
      A0A6I8T1T1, A0A803JQ57
      Conserved Domains (3) summary
      TIGR01628
      Location:543 → 651
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      PHA03247
      Location:949 → 1427
      PHA03247; large tegument protein UL36; Provisional
      pfam11502
      Location:410 → 448
      BCL9; B-cell lymphoma 9 protein

    4. XM_004918212.4 → XP_004918269.1  B-cell CLL/lymphoma 9 protein

      See identical proteins and their annotated locations for XP_004918269.1

      UniProtKB/TrEMBL
      A0A6I8T1T1, A0A803JQ57
      Conserved Domains (3) summary
      TIGR01628
      Location:543 → 651
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      PHA03247
      Location:949 → 1427
      PHA03247; large tegument protein UL36; Provisional
      pfam11502
      Location:410 → 448
      BCL9; B-cell lymphoma 9 protein
    Nucleotide Protein Strain
    Heading Accession and Version

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