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    ATP6V1C1 ATPase H+ transporting V1 subunit C1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100395645, updated on 6-Jun-2024

    Summary

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    Gene symbol
    ATP6V1C1
    Gene description
    ATPase H+ transporting V1 subunit C1
    See related
    Ensembl:ENSCJAG00000016100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    See ATP6V1C1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 16 NC_071457.1 (92055999..92107811, complement)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 16 NC_048398.1 (92188453..92238615, complement)

    Chromosome 16 - NC_071457.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase assembly factor 4 homolog, mitochondrial-like Neighboring gene BAALC binder of MAP3K1 and KLF4 Neighboring gene U7 small nuclear RNA Neighboring gene PHD finger-like domain-containing protein 5A Neighboring gene mitotic spindle assembly checkpoint protein MAD1-like Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of vacuolar proton-transporting V-type ATPase, V1 domain IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V-type proton ATPase subunit C 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071457.1 Reference mCalJa1.2.pat.X

      Range
      92055999..92107811 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054246349.1 → XP_054102324.1  V-type proton ATPase subunit C 1 isoform X2

      UniProtKB/TrEMBL
      A0A2R8M5Z4

    2. XM_002759317.5 → XP_002759363.1  V-type proton ATPase subunit C 1 isoform X1

      See identical proteins and their annotated locations for XP_002759363.1

      UniProtKB/TrEMBL
      A0A2R8M5Z4, F7INY1
      Related
      ENSCJAP00000029697.2
      Conserved Domains (2) summary
      cd14785
      Location:56 → 76
      V-ATPase_C; 3-helical coiled coil [structural motif]
      pfam03223
      Location:5 → 370
      V-ATPase_C; V-ATPase subunit C

    3. XM_035276841.2 → XP_035132732.1  V-type proton ATPase subunit C 1 isoform X1

      UniProtKB/TrEMBL
      A0A2R8M5Z4, F7INY1
      Conserved Domains (2) summary
      cd14785
      Location:56 → 76
      V-ATPase_C; 3-helical coiled coil [structural motif]
      pfam03223
      Location:5 → 370
      V-ATPase_C; V-ATPase subunit C

    4. XM_017965646.3 → XP_017821135.1  V-type proton ATPase subunit C 1 isoform X1

      UniProtKB/TrEMBL
      A0A2R8M5Z4, F7INY1
      Conserved Domains (2) summary
      cd14785
      Location:56 → 76
      V-ATPase_C; 3-helical coiled coil [structural motif]
      pfam03223
      Location:5 → 370
      V-ATPase_C; V-ATPase subunit C
    Nucleotide Protein
    Heading Accession and Version

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