U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    DCAF7 DDB1 and CUL4 associated factor 7 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100390366, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    DCAF7
    Gene description
    DDB1 and CUL4 associated factor 7
    See related
    Ensembl:ENSCJAG00000019745
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See DCAF7 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 5 NC_071446.1 (84834431..84877368)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 5 NC_048387.1 (87585957..87628900)

    Chromosome 5 - NC_071446.1Genomic Context describing neighboring genes Neighboring gene angiotensin-converting enzyme-like protein Ace3 Neighboring gene uncharacterized LOC103793129 Neighboring gene potassium voltage-gated channel subfamily H member 6 Neighboring gene U6 spliceosomal RNA Neighboring gene translational activator of mitochondrially encoded cytochrome c oxidase I Neighboring gene elongation factor 1-delta-like Neighboring gene mitogen-activated protein kinase kinase kinase 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    DDB1- and CUL4-associated factor 7

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071446.1 Reference mCalJa1.2.pat.X

      Range
      84834431..84877368
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002748135.6 → XP_002748181.1  DDB1- and CUL4-associated factor 7

      See identical proteins and their annotated locations for XP_002748181.1

      UniProtKB/TrEMBL
      F6SPY4
      Related
      ENSCJAP00000036699.1
      Conserved Domains (2) summary
      sd00039
      Location:71 → 116
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:19 → 295
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.